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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgctcataaatcgttcctcgaatgtgtacatatttcccattgttgatcaaaccaggcttctcttcagctctctctctctgtacagATTACTTCTCGAGAAGATGTAACGGAGGTTTTACAGGCACGTTTCTGGGAGGTTGTGCCTGGTCACACTGTTGGCTCACTCAGACTCCAG

Basic information

species Arabidopsis thaliana
transcript AT3G12100.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164174020|gb|ES165820.1|ES165820
EST:     TTCCTTCTTCTGCTTTAAGCAAATGTTTGCGACAG                         ATTACTTCTCGAGAAGATGTAACGGAGGTTTTACAGGCACGTTTCTGGGAG
genomic: TTCCTTCTTCTGCTTTAAGCAAATGCTTGCGACAGgttcgctcat ... ctctgtacagATTACTTCTCGAGAAGATGTAACGGAGGTTTTACAGGCACGTTTCTGGGAG
EST: gi|19741112|gb|AU226465.1|AU226465
EST:     TGGCACCCCCAAACATTCCTTCTTCTGCTTTAAGCAAATGCTTGCGACAG                         ATTACTTCTCGAGAAGAT-TGACGGAGGTTTTACAGGCACGTTTCTGGGAG
genomic: TGGCACCCCCAAACATTCCTTCTTCTGCTTTAAGCAAATGCTTGCGACAGgttcgctcat ... ctctgtacagATTACTTCTCGAGAAGATGTAACGGAGGTTTTACAGGCACGTTTCTGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttcccattgttgatcaaaccaggcttctcttcagctctctctctctgtacagATTACTTCTCGAGAAGATGTAACGGAGGTTTTACAGGCACGTTTCTGGGAGGTTGTGCCTGGTCACACTGTTGGCTCACTCAGACTCCAG
          tgttgat  putative branch site (score: 4)
                          cttctcttcagctctc  putative PPT