Sequence
atgc intronic sequence ATGC exonic sequencegtctgtatttttcttaactagtacataactatgatagctgaatcatttcagttctaactggttctaaattcatgtttagACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAACCCATCATTTAGTCATGTTTAT
Basic information
species | Arabidopsis thaliana |
transcript | AT3G05090.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os12g06810.2 (Oryza sativa), 3'ss of exon 8
-----------------------------------------------gtctgtatttt------tcttaactagtaca-taactatgatagc-tgaatcatttcagttctaactggttctaaattcatgtttagACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAACCCATCATTTAGTCATGTTTAT
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gtaattcacagttctagtcttgcccactccagatcttgtgtatgtgtgtatgcacactaaaatatctgtactttcacactgatcatgaagtcatgtaacatcttgtctgcacatgtttctggattt---tgcagATTATGGGATCTGGGACAGCAGCGATGTATTCATTCTTATGCTGTGCATACTGATTCAGTCTGGGCGCTTGCAAGCACTCCTTCGTTTAGTCATGTTTAT
upper sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G167999_T02 (Zea mays), 3'ss of exon 8
----------------------------gtctgtatttttcttaactagtacata-actatgatagctgaatcatttcagttctaactggttctaaattcatgtttagACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAACCCATCATTTAGTCATGTTTAT
||| | | || | ||| | | | || || || | ||| || | || || | | || | | ||||||||||||||||| |||||||| ||| ||||| | ||||| |||||||| |||||||||||||| |||||| ||| || ||||| ||||||| ||
gtaaacacacagctctaacatctcaaccatctccctctctcatg-ttagcataaatgctgtggtaagtttgacatcatagat---acatatttttatttactttgcagACTATGGGATCTAGGACAGCAGCGTTGTGTTCATTCTTATGCTGTGCATACTGATTCTGTTTGGGCACTTGCAAGCACTCCTGCATTTGGTCATGTCTAC
upper sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA03G40360.1 (Glycine max), 3'ss of exon 8
gtctgtatttttcttaactagtac-ataactatga-tagctgaatcatttcagttctaactggttctaaattcatgttt------agACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAACCCATCATTTAGTCATGTTTAT
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----gtaatgcacacatatggagttattaccatttctgtttgttttgttttgtgtttgactaataatctgtccatctttcctcatagGCTTTGGGATATAGGTCAGCAGAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTTGCCAGCACCCCAACATTTAGTCATGTTTAT
upper sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA19G43070.1 (Glycine max), 3'ss of exon 8
gtc-tgtatttttcttaactagtacataactatgatagctgaatcatttcagtt--ctaactggttctaaat-tcatgtttagACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAACCCATCATTTAGTCATGTTTAT
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gtaatgcacacatatggagttataagcatttctatttgttttgtttttgtggttgactaataatctgtcggtgtttcctctagGCTTTGGGATATAGGTCAGCAGAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTTGCCAGCACCCCAACATTTAGTCATGTTTAT
upper sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA03G40440.3 (Glycine max), 3'ss of exon 8
-----gtctgtatttttcttaactagtacataactatgata-gctgaatcatttcagtt--ctaactggttctaaat--tcatgtttagACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAACCCATCATTTAGTCATGTTTAT
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gtaatgcacacgtatggagttataagcatttctatttgttttgttttgtttttgtggttgactaattatctgtacatctttacgcttagGCTTTGGGATATAGGTCAGCAGAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTCGCCAGCACCCCAGCATTTAGTCATGTTTAT
upper sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA19G42990.1 (Glycine max), 3'ss of exon 8
gtc-tgtatttttcttaactagtacataactatgatagc--tgaatcatttcagttctaactggt------tctaaattcatgtttagACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAACCCATCATTTAGTCATGTTTAT
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gtaatgcacacatatggagttattaccatttctgtttgttttgttttgttttgtgtttgactaataatctgtccaactttcctcatagGCTTTGGGATATAGGTCAGCAAAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTTGCCAGCACCCCAACATTTAGTCATGTTTAT
upper sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
gtctgtatttttcttaactagtacataactatgatagctgaatcatttcagttctaactggttcta--aattcatgtt-tagACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAACCCATCATTTAGTCATGTTTAT
||| | || | || | | || || || | ||| | | ||| | | | | | ||| || |||||||| |||||||| || ||| | ||| | ||||| || |||||||||||| ||||||| |||||| ||| || |||||||||||||||||
----gtaatgcgtgtatatggtt--ttataataatttcttt-ttgttttatggtttactaatctcaccatctttcatcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
upper sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 8
--------------gtctgtatt-tttcttaactagtacataactatgatagctgaatcatttcagttct-aactggt---tctaaattcatgttt---agACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAACCCATCATTTAGTCATGTTTAT
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atcacgcattcaatatatgtttcgtttatttccttataattaatccttttag-tgcttcatgtggttgatcaacctgtacatctctcttcacatttcacagGCTATGGGATCTTGGTCAGCAGAGATGCGTGCATTCCTATGCCGTGCATACAGATTCTGTCTGGGCACTTGCAAGCACCCCAACATTTAGCCATGTTTATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125126418|gb|EL171615.1|EL171615EST: AACTGGCAGGTTTTGCTTGTCTGGGTCGTCTGATTCTATGATAAG ACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTG
genomic: AACTGGCAGGTTTTGCTTGTCTGGGTCGTCTGATTCTATGATAAGgtctgtattt ... tcatgtttagACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataactatgatagctgaatcatttcagttctaactggttctaaattcatgtttagACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAACCCATCATTTAGTCATGTTTAT
taaattcatgttta TA-rich tract