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...gggttccaatttaataagattactacatactacatgctactactagattgacaatgataattattccctaacaccaaattgtgataattttatctttcagAACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTGCAACAGGAGGAGGAGTTTTCTCATCTTAAACGAAGACAAGTACCAATGT
species | Arabidopsis thaliana |
transcript | AT2G38170.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGCTATTTCATTATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGA AACAAAATGCCATTEST: gi|86076708|gb|DR372465.1|DR372465
genomic: TTGCTATTTCATTATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGAgtgagttagt ... tatctttcagAACAAAATGCCATT
EST: TTGCTATTTCATTATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGA AACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTGEST: gi|124982803|gb|EL055582.1|EL055582
genomic: TTGCTATTTCATTATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGAgtgagttagt ... tatctttcagAACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTG
EST: ATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGA AACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCAEST: gi|116473762|gb|EG516354.1|EG516354
genomic: ATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGAgtgagttagt ... tatctttcagAACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCA
EST: CCATCTGTTTCTTCGTCGACAAACTTCCCCAGA AACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTGEST: gi|124912932|gb|EH986913.1|EH986913
genomic: CCATCTGTTTCTTCGTCGACAAACTTCCCCAGAgtgagttagt ... tatctttcagAACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTG
EST: GTCGACAAACTTCCCCAGA AACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTG
genomic: GTCGACAAACTTCCCCAGAgtgagttagt ... tatctttcagAACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTG
gattgacaatgataattattccctaacaccaaattgtgataattttatctttcagAACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTGCAACAGGAGGAGGAGTTTTCTCATCTTAAACGAAGACAAGTACCAATGT
ccctaac putative branch site (score: 2)
ttttatctttc putative PPT
aaattgtgataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggttccaatttaataagattactacatactacatgctactactagattgacaatgataattattccctaacaccaaattgtgataattttatctttcagAACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTGCAACAGGAGGAGGAGTTTTCTCATCTTAAACGAAGACAAGTACCAATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - aataaga
- - - - - - - - - - - ctacata
- - - - - - - - - - - - - - - - - - - - - - - - - acaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccaaa