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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatgattaaccgagatgatattaacatgctttgactgttcgttctaacttttgtaaatttactccatatactcattctcttgtatttgctattacattagTTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G79650.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116469868|gb|EG512460.1|EG512460
EST:     CTGGCTCTGGAGATCTTGGGACACTTGAATTTCTTAGAAACAATGACCAG                         TTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAG
genomic: CTGGCTCTGGAGATCTTGGGACACTTGAATTTCTTAGAAACAATGACCAGgttgctattc ... attacattagTTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAG
EST: gi|124824147|gb|EH909013.1|EH909013
EST:     CTGGCTCTGGAGATCTTGGGACACTTGAATTTCTTAGAAACAATGACCAG                         TTCCAACAATTACGCACCATGGT
genomic: CTGGCTCTGGAGATCTTGGGACACTTGAATTTCTTAGAAACAATGACCAGgttgctattc ... attacattagTTCCAACAATTACGCACCATGGT
EST: gi|163987194|gb|ES134926.1|ES134926
EST:     AATTTACTTAGAAACAATGACCAG                         TTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAG
genomic: AATTT-CTTAGAAACAATGACCAGgttgctattc ... attacattagTTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAG
EST: gi|116469869|gb|EG512461.1|EG512461
EST:     CTGGCTCTGGAGATCTTGGGACACTTGAATTTCTTAGAAACAATGACCAG                         TTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAG
genomic: CTGGCTCTGGAGATCTTGGGACACTTGAATTTCTTAGAAACAATGACCAGgttgctattc ... attacattagTTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttttgtaaatttactccatatactcattctcttgtatttgctattacattagTTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAG
 ttctaac  putative branch site (score: 1)
     ttgtaaattta  TA-rich tract