1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgtgctgcttttttttgtgtttgactgtcccgtagagcgaacatatacattattgtgaactctagggcactggttaattcagatatcataaaacagcttgcttaattaatcgtagttcgtagatggcttacttggatagatcttgggattattttcttgatttctgacctttaaactcttctaattgcagCAGGGTGGAAGCTCAGATAAAATATCCA
species | Arabidopsis thaliana |
transcript | AT1G67325.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAG --GG-TGGAAGCTCAGATAAAATATCCAEST: gi|125197996|gb|EL212950.1|EL212950
genomic: GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctg ... ctaattgcagCAGGGTGGAAGCTCAGATAAAATATCCA
EST: TGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAG CAGGGTGGAAGCTCAGATAAAATATCCAEST: gi|116485681|gb|EG528273.1|EG528273
genomic: TGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctg ... ctaattgcagCAGGGTGGAAGCTCAGATAAAATATCCA
EST: GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAG CAGGGTGGAAGCTCAGATAAAATATCCAEST: gi|116485680|gb|EG528272.1|EG528272
genomic: GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctg ... ctaattgcagCAGGGTGGAAGCTCAGATAAAATATCCA
EST: GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTTTCAG CAGGGTGGAAGCTCAGATAAAATATCCAEST: gi|116475625|gb|EG518217.1|EG518217
genomic: GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctg ... ctaattgcagCAGGGTGGAAGCTCAGATAAAATATCCA
EST: GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAG --GG-TGGAAGCTCAGATAAAATATCCA
genomic: GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctg ... ctaattgcagCAGGGTGGAAGCTCAGATAAAATATCCA
atagatcttgggattattttcttgatttctgacctttaaactcttctaattgcagCAGGGTGGAAGCTCAGATAAAATATCCA
ttctaat putative branch site (score: 2)
ctcttct CT-rich tract
attattttcttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgctgcttttttttgtgtttgactgtcccgtagagcgaacatatacattattgtgaactctagggcactggttaattcagatatcataaaacagcttgcttaattaatcgtagttcgtagatggcttacttggatagatcttgggattattttcttgatttctgacctttaaactcttctaattgcagCAGGGTGGAAGCTCAGATAAAATATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA