Sequence
atgc intronic sequence ATGC exonic sequencegtaagttgcgcaactcttcagccagcatgtacagagatttcattcttctagtatatggtaactgaacattttaatttgtatcaaagttgtgcgttaagctcaattaatagtaatcccttaagtttatcagaatgctggcctggataaatggtgtccatcagacctaattggttactgaattagtatttcctttctgctagGTTTGCTCCAGAGAAAATCTGGTACATTGATCAAATGCTAAAGGTTCTATCTGAG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G60070.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G60070.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA08G39930.1 (Glycine max), 3'ss of exon 8
gtaagttgcgcaactcttcagccagcatgtacagagatttcattcttctagtatatggtaactgaacattttaatttgtatcaaagttgtgcgttaagctcaattaatagtaatcccttaagtttatcagaatgctggcctggataaatggtgtccatcagacctaattggttactgaattagtatttcctttctgctagGTTTGCTCCAGAGAAAATCTGGTACATTGATCAAATGCTAAAGGTTCTATCTGAG
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-----------------------------------------------------------------------------------ctgttacccttta--tcagtttagaagtagtagctagtgtttt-----atttttccccacatctat----------aaatgtatttggtttataacatttacttatttgtgcttcagGTTTTCCCCAGAGAAGATCTGGTACATTGATCAAATGCTGAAGGTTCTGTCTGAG
upper sequence: AT1G60070.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 3'ss of exon 8
gtaagttgcgcaactcttcagccagcatgtacagagatttcattcttctagtatatggtaactgaacattttaatttgtatcaaagttgtgcgttaagctcaattaatagtaatcccttaagtttatcagaatgctggcctggataaatggtgtccatcagacc-taattggttactgaattagtatttcctttctgctagGTTTGCTCCAGAGAAAATCTGGTACATTGATCAAATGCTAAAGGTTCTATCTGAG
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--------------------------------------------------------------------------------------------------cataatgaaccataataa---aagatcggaactacttttggtcttccaacttttctttttctggtaatattctgtcaaataatgtttactattcatgttttagGTTTTCCCCTGAGAAAATATGGTACATTGATCAGATGCTCAAGGTTCTTTCTGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124816130|gb|EH900996.1|EH900996EST: CAAGATTTTAAAGGAGATCTTACTGCAGAGATATGCTCCATAGTTGAAAA GTTTGCTCCAGAGAAAATCTGG
genomic: CAAGATTTTAAAGGAGATCTTACTGCAAAGATATGCTCCATAGTTGAAAAgtaagttgcg ... tttctgctagGTTTGCTCCAGAGAAAATCTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatggtgtccatcagacctaattggttactgaattagtatttcctttctgctagGTTTGCTCCAGAGAAAATCTGGTACATTGATCAAATGCTAAAGGTTCTATCTGAG
acctaat putative branch site (score: 3)
tatttcctttctgct putative PPT
aattagtattt TA-rich tract