1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacttccttaactatattccacctcccaaccaaacacactgagcctactggtccatcattgtcttctctttgaatattatgcatagGTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTGCTTGAGTTGAGTGGAAACAATGCAATCATAGTCATGGACGATGCTGATA
species | Arabidopsis thaliana |
transcript | AT1G54100.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGG GTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTGEST: gi|116420807|gb|EG463399.1|EG463399
genomic: TAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGGgtacttcctt ... ttatgcatagGTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTG
EST: TAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGG GTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTGEST: gi|116486592|gb|EG529184.1|EG529184
genomic: TAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGGgtacttcctt ... ttatgcatagGTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTG
EST: TAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGG GTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTGEST: gi|116486594|gb|EG529186.1|EG529186
genomic: TAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGGgtacttcctt ... ttatgcatagGTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTG
EST: TAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGG GTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTGEST: gi|125242054|gb|EL256139.1|EL256139
genomic: TAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGGgtacttcctt ... ttatgcatagGTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTG
EST: CAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGG GTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTGEST: gi|116420806|gb|EG463398.1|EG463398
genomic: CAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGGgtacttcctt ... ttatgcatagGTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTG
EST: TAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGG GTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTGEST: gi|116486590|gb|EG529182.1|EG529182
genomic: TAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGGgtacttcctt ... ttatgcatagGTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTG
EST: TAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGG GTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTGEST: gi|116486591|gb|EG529183.1|EG529183
genomic: TAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGGgtacttcctt ... ttatgcatagGTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTG
EST: TAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGG GTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTG
genomic: TAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGGgtacttcctt ... ttatgcatagGTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTG
aaacacactgagcctactggtccatcattgtcttctctttgaatattatgcatagGTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTGCTTGAGTTGAGTGGAAACAATGCAATCATAGTCATGGACGATGCTGATA
tctttgaatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttccttaactatattccacctcccaaccaaacacactgagcctactggtccatcattgtcttctctttgaatattatgcatagGTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTGCTTGAGTTGAGTGGAAACAATGCAATCATAGTCATGGACGATGCTGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT