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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaacaaatttgtatctcttctttgcaaagtgtttgttttggttgttttgtactttatctaacatcatgtgtctcttttcagGTGGGTTTTCCATTTTGCTCAACTACGCCAGCTGCCTGTTCTTGTCCCATATATGCCTACGGATAACCCAAGGCTTAAGGATACTGTGTATGAG

Basic information

species Arabidopsis thaliana
transcript AT1G08190.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125240765|gb|EL254850.1|EL254850
EST:     CTTTATGCCCCAAATTGTTACGAGGATCTGCTTCAGCCTGGGAGAG                         GTGGGTTTTCCATT
genomic: CTTTATGCCCCAAATTGTTACGAGGATCTGCTTCAGCCTGGGAGAGgtttgaacaa ... ctcttttcagGTGGGTTTTCCATT
EST: gi|86063802|gb|DR359559.1|DR359559
EST:     GCATCTTTATGCCCCAAATTGTTACGAGGATCTGCTTCAGCCTGGGAGAG                         GTGGGTTTTCCATTTTGCTCAACTACGCCAGCTGCCTGTTCTTGTCCCATA
genomic: GCATCTTTATGCCCCAAATTGTTACGAGGATCTGCTTCAGCCTGGGAGAGgtttgaacaa ... ctcttttcagGTGGGTTTTCCATTTTGCTCAACTACGCCAGCTGCCTGTTCTTGTCCCATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtgtttgttttggttgttttgtactttatctaacatcatgtgtctcttttcagGTGGGTTTTCCATTTTGCTCAACTACGCCAGCTGCCTGTTCTTGTCCCATATATGCCTACGGATAACCCAAGGCTTAAGGATACTGTGTATGAG
                             atctaac  putative branch site (score: 2)
 tgtctcttttc  putative PPT
 tttatctaa  TA-rich tract