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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatgcctacattcatctcttttcctcatctagatttgtgggaaaaacttaattcttgacagttgttttacttctatgccgcacagGTGCTTAAGAGAGAGGCACGGCTAAGCCAATGAGAGTACTATGGTCACGAGTTTCCACGATCTGGAAACTATTGGCTTTATGTGAACTGCTTGTGCAAAT

Basic information

species Arabidopsis thaliana
transcript AT5G58030.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086381|gb|DR382140.1|DR382140
EST:     AAGGACAACAACGTCCTCGAACTACTATTTTGATCAAGTTTGCTGATGAG                         GTGCTTAAGAGAGAGGCACGGCTAAGCCAATGAGAGTACTATGGTCACGAG
genomic: AAGGACAACAACGTCCTCGAACTACTATTTTGATCAAGTTTGCTGATGAGgttaatgcct ... tgccgcacagGTGCTTAAGAGAGAGGCACGGCTAAGCCAATGAGAGTACTATGGTCACGAG
EST: gi|164170220|gb|ES127157.1|ES127157
EST:     ATCAAGTTTGCTGATGAG                         GTGCTTAAGAGAGAGGCACGGCTAAGCCAATGAGAGTACTATGGTC
genomic: ATCAAGTTTGCTGATGAGgttaatgcct ... tgccgcacagGTGCTTAAGAGAGAGGCACGGCTAAGCCAATGAGAGTACTATGGTC
EST: gi|19741160|gb|AU226513.1|AU226513
EST:     AAGGACAACAACCTCCTCGAACTACTATTTTGATCAAGTTTGCTGATGAG                         GTGCTTAAGAGAGAGGCACGGCTAAGCCAATGAGAGTACTATGGTCACGAG
genomic: AAGGACAACAACGTCCTCGAACTACTATTTTGATCAAGTTTGCTGATGAGgttaatgcct ... tgccgcacagGTGCTTAAGAGAGAGGCACGGCTAAGCCAATGAGAGTACTATGGTCACGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatttgtgggaaaaacttaattcttgacagttgttttacttctatgccgcacagGTGCTTAAGAGAGAGGCACGGCTAAGCCAATGAGAGTACTATGGTCACGAGTTTCCACGATCTGGAAACTATTGGCTTTATGTGAACTGCTTGTGCAAAT
                      tcttgac  putative branch site (score: 3)
                                       cttctat  putative PPT
           aaaaacttaattctt  TA-rich tract