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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataagatctgatgtacattcaaattgtgttcaagttattaaaataaacagagtaatggatccttatttgaccaatttgtttccctgaacgcagCATACTTACAGGACTTCTCTCATTTATG

Basic information

species Arabidopsis thaliana
transcript AT5G50430.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068907|gb|DR364664.1|DR364664
EST:     TTCATCCAGAAAGCTGGAATCCAATGTGGTCAGTGTCAAG                         CATACTTACAGGACTTCTCTCATTTATG
genomic: TTCATCCAGAAAGCTGGAATCCAATGTGGTCAGTGTCAAGgtataagatc ... ctgaacgcagCATACTTACAGGACTTCTCTCATTTATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaataaacagagtaatggatccttatttgaccaatttgtttccctgaacgcagCATACTTACAGGACTTCTCTCATTTATG
                          atttgac  putative branch site (score: 4)
                                    tttgtttccct  putative PPT
                                  aatttgttt  TA-rich tract