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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtgttttggtttgttaaagtgctagctattatcttctgagaatcagttcaagtatagtctaaattgcaacactttcgatcatgaattgtgtttgtctttttttgttgggaactttgcagTTGCTAAGCTTCCTAGCGGAAATCCCATCCATTCGTCTCATTGTG

Basic information

species Arabidopsis thaliana
transcript AT5G27600.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116450759|gb|EG493351.1|EG493351
EST:     ATCATGCTAATCTGCAAGCTATATTTTGTGTACCACAAACCTTGAATATT                         TTGCTAAGCTTCCTAGCGGAAATCCCATCCATTCGTCTCATTGTGGTGGTG
genomic: ATCATGCTAATCTGCAAGCTATATTTTGTGTACCACAAACCTTGAATATTgtaagtgtgt ... aactttgcagTTGCTAAGCTTCCTAGCGGAAATCCCATCCATTCGTCTCATTGTGGTGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaacactttcgatcatgaattgtgtttgtctttttttgttgggaactttgcagTTGCTAAGCTTCCTAGCGGAAATCCCATCCATTCGTCTCATTGTG
                                tttttttgtt  TA-rich tract