Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttgtgggcacctatacgagcattccgattctaaaaactgtacctgtaataataatattgaattagtcttttgttttgtttcttccagTTTGGAATCAAGTCTGCAATTTTAAACGGGGAATTGCCTCAGAATTCTCGACTTCATATCCTTGAG

Basic information

species Arabidopsis thaliana
transcript AT4G34910.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34910.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv00s0441g00010.t01 (Vitis vinifera), 3'ss of exon 6
----------gtaacttgtgggcacctatacgagcattccgattctaaaaactgtacctgtaataataatattgaattagtcttttgttttgtttcttccagTTTGGAATCAAGTCTGCAATTTTAAACGGGGAATTGCCTCAGAATTCTCGACTTCATATCCTTGAG
           | | || |  |     || | |  ||        |  |  ||  | || |  || |  |||||  | | | ||   | || | | |  ||||||||||||||||||||  ||||||| |  || ||||| || ||||| || || ||||||||||||
gtgcatgtctctgagttatctgtttgcatgccacaatcttttgcttggattcttcatctctt-tatttctattgt-tgatttttccatgttatctgtggcagTTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAAAATTCCCGTCTGCATATCCTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164009061|gb|ES180853.1|ES180853
EST:     TCATCAATACAATTGACATGGGATTCAGGTTGAAATTATTCTTGGAAAAG                         TTTGGAATCAAGTCTGC
genomic: TCATCAATACAATTGACATGGGATTCAGGTTGAAATTATTCTTGGAAAAGgtaacttgtg ... tttcttccagTTTGGAATCAAGTCTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaactgtacctgtaataataatattgaattagtcttttgttttgtttcttccagTTTGGAATCAAGTCTGCAATTTTAAACGGGGAATTGCCTCAGAATTCTCGACTTCATATCCTTGAG
 ttctaaa  putative branch site (score: 2)
                                 tcttttgttttgtttc  putative PPT
             taataataatattgaa  TA-rich tract