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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaccattaccattactcaagattgcaaaagaaaaacatcaaagagcctttttatgaatgtttcttgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATTCTGTCAATCTCCAGCGGCGGCAAAACCAACACTGTCAAATGCACCAA

Basic information

species Arabidopsis thaliana
transcript AT4G22890.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22890.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA17G14240.1 (Glycine max), 3'ss of exon 8
gtaagaaccattaccattactcaagattgcaaaagaaaaacatcaaagagc--ctttttatgaatgtttcttgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATTCTGTCAATCTCCAGCGGCGGCAAAACCAACACTGTCAAATGCACCAA
    | |  | |   | |||   ||  | |   ||   |  ||  ||  ||  | | |||   |  ||| || ||| | |||||||||||||||| || || || ||||||||||| |||||||| || || || ||||| || |  || ||    |||||||||||||||||| ||||
----gtataaattttactaccagagtctcctgtaggtta-tatttaactgctacatattactgacatttatt-ttttatagGGTCCTTGTCCGAACTGCGGTACTGAAAACACCTCTTTCTTTGGGACTATACTTTCAATTTCAAATGGTGGTTCCACCAACACTGTCAAATGCTCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125251750|gb|EL265835.1|EL265835
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|125103002|gb|EL157558.1|EL157558
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTT
EST: gi|124993076|gb|EL065345.1|EL065345
EST:     GGCTTTATCTAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTAGGAACGGAAAACACCTCCTTCTTTGGAACAAT
genomic: GGCTTTATC-AATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGT-GGAACGGAAAACACCTCCTTCTTTGGAACAAT
EST: gi|116431831|gb|EG474423.1|EG474423
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|124845093|gb|EH929530.1|EH929530
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|124795262|gb|EH884941.1|EH884941
EST:     AATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: AATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|124896917|gb|EH973131.1|EH973131
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGG
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGG
EST: gi|124774374|gb|EH864503.1|EH864503
EST:     TTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|125195707|gb|EL210661.1|EL210661
EST:     TGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACC
genomic: TGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACC
EST: gi|125091557|gb|EL149380.1|EL149380
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAAT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAAT
EST: gi|124938659|gb|EL015267.1|EL015267
EST:     TTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|116431832|gb|EG474424.1|EG474424
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|86077608|gb|DR373365.1|DR373365
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|125283763|gb|EL297848.1|EL297848
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACA
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACA
EST: gi|86076317|gb|DR372074.1|DR372074
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgcaaaagaaaaacatcaaagagcctttttatgaatgtttcttgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATTCTGTCAATCTCCAGCGGCGGCAAAACCAACACTGTCAAATGCACCAA
                                        tttcttgtttc  CT-rich tract
                            tttttatgaatgttt  TA-rich tract