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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaggatgatttgtcaaaaatatggtttatcatgcatgccactacatagaaatattaactacgtgtttgcagGCCATAGAACAATATGGTGATGTGGATGTTTACACATCGAACTTTAGGCCATTAAAGGCTACCCTTTCAGGACTTCCAGACCGAGTATTTATGAAACTCA

Basic information

species Arabidopsis thaliana
transcript AT3G54660.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116472768|gb|EG515360.1|EG515360
EST:     GTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAG                         GCCATAGAACAATATGGTGATGTGGATGTTTACACATCGAACTTTAGGCCA
genomic: GTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAGgtaagtagga ... gtgtttgcagGCCATAGAACAATATGGTGATGTGGATGTTTACACATCGAACTTTAGGCCA
EST: gi|86059408|gb|DR355165.1|DR355165
EST:     CCGTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAG                         GCCATAGAACAAATATGGTGATGTGGATGTTTACACATCGAACTT
genomic: CCGTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAGgtaagtagga ... gtgtttgcagGCCATAGAACAA-TATGGTGATGTGGATGTTTACACATCGAACTT
EST: gi|47828527|gb|CK118211.1|CK118211
EST:     CCGTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAG                         GCCATAGAACAATATG
genomic: CCGTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAGgtaagtagga ... gtgtttgcagGCCATAGAACAATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatatggtttatcatgcatgccactacatagaaatattaactacgtgtttgcagGCCATAGAACAATATGGTGATGTGGATGTTTACACATCGAACTTTAGGCCATTAAAGGCTACCCTTTCAGGACTTCCAGACCGAGTATTTATGAAACTCA
                                   tattaac  putative branch site (score: 1)
                         tacatagaaatattaa  TA-rich tract