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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctctgaatgtgttctctttctacttgcggtttttcaacactcatgttttaatgtaagttagttatttgttggtcatgatgatgatgagattggtttctttattgtctggatgcagATCTTCGCCTTTTGAACCAACATCAGCAGTTTCAATCATGCACTGCATTCACTAGCGTCTTTAACAATACCGGATTGTTTGGAATCTATGGTTGCACG

Basic information

species Arabidopsis thaliana
transcript AT3G16480.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164214766|gb|ES099153.1|ES099153
EST:     TGCACTCTTGGCTCT                         ATCTTCGCCTTTTGAACCAACATCAGCAGTTTCAATCATGCACTGC
genomic: TGCACTCTTGGCTCTgtaagtctct ... ctggatgcagATCTTCGCCTTTTGAACCAACATCAGCAGTTTCAATCATGCACTGC
EST: gi|47829013|gb|CK118697.1|CK118697
EST:     TGGCTCATTTTCTGCGGGAGGCCCTGGAAAAGGAATGCACTCTTGGCTCT                         ATCTTCGCCTTTTGAACCAACATCAGCAGTTTCAATCATGCACTGCATTCA
genomic: TGGCTCATTTTCTGCGGGAGGCCCTGGAAAAGGAATGCACTCTTGGCTCTgtaagtctct ... ctggatgcagATCTTCGCCTTTTGAACCAACATCAGCAGTTTCAATCATGCACTGCATTCA
EST: gi|125199741|gb|EL214695.1|EL214695
EST:     CCCTGGAAAAGGAATGCACTCTTGGCTCT                         ATCTTCGCCTTTTGAACCAACATCAGCAGTTTCAATCATGCACTGCATTCA
genomic: CCCTGGAAAAGGAATGCACTCTTGGCTCTgtaagtctct ... ctggatgcagATCTTCGCCTTTTGAACCAACATCAGCAGTTTCAATCATGCACTGCATTCA
EST: gi|86061726|gb|DR357483.1|DR357483
EST:     TGGCTCATTCTCTGCTGGAGGCCCTGGAAAAGGAATGCACTCTTGGCTCT                         ATCTTCGCCTTTTGAACCAACATCAGCAGTTTCAATCATGCACTGCATTCA
genomic: TGGCTCATTTTCTGCGGGAGGCCCTGGAAAAGGAATGCACTCTTGGCTCTgtaagtctct ... ctggatgcagATCTTCGCCTTTTGAACCAACATCAGCAGTTTCAATCATGCACTGCATTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatttgttggtcatgatgatgatgagattggtttctttattgtctggatgcagATCTTCGCCTTTTGAACCAACATCAGCAGTTTCAATCATGCACTGCATTCACTAGCGTCTTTAACAATACCGGATTGTTTGGAATCTATGGTTGCACG
                                 tttctttattgtct  CT-rich tract
                                 tttctttatt  TA-rich tract