1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagctccctctactgccttttggctggtaatcaacaacattacatcttcataatcctgattactgaaaaacatgttctttttgcagATCGAAGCAGCTGTTCTGTACCCAGGGACACGCCCTACTGTCTTAAGGATTCGTTTAAG
species | Arabidopsis thaliana |
transcript | AT1G21760.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGAAAATCTTTACAAAGGCACTTATACACTGTCAATGTCGGATGATAAG ATCGAAGCAGCTGTTCTEST: gi|125156960|gb|EL186308.1|EL186308
genomic: CTGAAAATCTTTACAAAGGCACTTATACACTGTCAATGTCGGATGATAAGgttagctccc ... ctttttgcagATCGAAGCAGCTGTTCT
EST: AAAATCTTTACAAAGGCACTTATACACTGTCAATGTCGGATGATAAG ATCGAAGCAGCTGTTCTGTACCCAGGGACACGCCCTACTGTCTTAAGGATTEST: gi|86076059|gb|DR371816.1|DR371816
genomic: AAAATCTTTACAAAGGCACTTATACACTGTCAATGTCGGATGATAAGgttagctccc ... ctttttgcagATCGAAGCAGCTGTTCTGTACCCAGGGACACGCCCTACTGTCTTAAGGATT
EST: CTTATACACTGTCAATGTCGGATGATAAG ATCGAAGCAGCTGTTCTGTACCCAGGGACACGCCCTACTGTCTTAAGGATT
genomic: CTTATACACTGTCAATGTCGGATGATAAGgttagctccc ... ctttttgcagATCGAAGCAGCTGTTCTGTACCCAGGGACACGCCCTACTGTCTTAAGGATT
caacaacattacatcttcataatcctgattactgaaaaacatgttctttttgcagATCGAAGCAGCTGTTCTGTACCCAGGGACACGCCCTACTGTCTTAAGGATTCGTTTAAG
tcctgat putative branch site (score: 3)
tgttcttttt putative PPT
ttcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagctccctctactgccttttggctggtaatcaacaacattacatcttcataatcctgattactgaaaaacatgttctttttgcagATCGAAGCAGCTGTTCTGTACCCAGGGACACGCCCTACTGTCTTAAGGATTCGTTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT