1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactactattaccagctgagtccaataaacatttgaaattttcttttttcttttgcaactctgtttggggagtctatatttaatcctttatttgatgaaaaccttgcagGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGAGATCTTTGATCTCAAGACTATCGGAACTACTACCGTAAACGCAGCTTG
species | Arabidopsis thaliana |
transcript | AT1G08110.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCMAMCGATG GAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGEST: gi|124934027|gb|EL011132.1|EL011132
genomic: CGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATGgtactactat ... aaccttgcagGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCG
EST: TTTGCCAAGAAACCAAACGATG GAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGEST: gi|124709913|gb|EH801315.1|EH801315
genomic: TTTGCCAAGAAACCAAACGATGgtactactat ... aaccttgcagGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCG
EST: TTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATG GAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGEST: gi|86079248|gb|DR375005.1|DR375005
genomic: TTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATGgtactactat ... aaccttgcagGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCG
EST: CGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATG GAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGEST: gi|86086149|gb|DR381908.1|DR381908
genomic: CGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATGgtactactat ... aaccttgcagGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCG
EST: CGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATG GAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGEST: gi|164099506|gb|ES113851.1|ES113851
genomic: CGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATGgtactactat ... aaccttgcagGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCG
EST: AACCAAACGATG GAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGEST: gi|301501106|gb|HO206646.1|HO206646
genomic: AACCAAACGATGgtactactat ... aaccttgcagGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCG
EST: CGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATG GAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGEST: gi|124954954|gb|EL030008.1|EL030008
genomic: CGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATGgtactactat ... aaccttgcagGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCG
EST: CGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATG GAAAGATGAAGAATATAEST: gi|124999439|gb|EL071708.1|EL071708
genomic: CGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATGgtactactat ... aaccttgcagGAAAGATGAAGAATATA
EST: CGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATG GAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGEST: gi|124726391|gb|EH817793.1|EH817793
genomic: CGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATGgtactactat ... aaccttgcagGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTG
EST: ATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATG GAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGEST: gi|125117533|gb|EL166636.1|EL166636
genomic: ATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATGgtactactat ... aaccttgcagGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCG
EST: GAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATG G-AAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGEST: gi|125090908|gb|EL148731.1|EL148731
genomic: GAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATGgtactactat ... aaccttgcagGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCG
EST: CGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATG GAAAGATGAAGAATATAGCCTTCA
genomic: CGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATGgtactactat ... aaccttgcagGAAAGATGAAGAATATAGCCTTCA
gcaactctgtttggggagtctatatttaatcctttatttgatgaaaaccttgcagGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGAGATCTTTGATCTCAAGACTATCGGAACTACTACCGTAAACGCAGCTTG
tatatttaatccttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactactattaccagctgagtccaataaacatttgaaattttcttttttcttttgcaactctgtttggggagtctatatttaatcctttatttgatgaaaaccttgcagGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGAGATCTTTGATCTCAAGACTATCGGAACTACTACCGTAAACGCAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT