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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatatatcccaaaatacattgttgaccattttgttctcttgtctttatttgctagttaacctataatatattggtgcagGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTGGGCTTGCTCGGTCATATTCTCATGATCATACTGGAAACCTCACAAATCG

Basic information

species Arabidopsis thaliana
transcript AT5G64960.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164127278|gb|EL997483.1|EL997483
EST:     CTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAG                         GTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
genomic: CTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtgaatatat ... attggtgcagGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
EST: gi|86059280|gb|DR355037.1|DR355037
EST:     TGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAG                         GTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
genomic: TGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtgaatatat ... attggtgcagGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
EST: gi|124812397|gb|EH897263.1|EH897263
EST:     ATGTGAATCAAGTGCTTACACCGTGATATAAAAG                         GTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
genomic: ATGTGAATCAAGTGCTT-CACCGTGATATAAAAGgtgaatatat ... attggtgcagGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
EST: gi|124946663|gb|EL022562.1|EL022562
EST:     CTTCACCGTGATATAAAAG                         GTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
genomic: CTTCACCGTGATATAAAAGgtgaatatat ... attggtgcagGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
EST: gi|125018561|gb|EL090830.1|EL090830
EST:     TGAATCAAGTGCTTCACCGTGATATAAAAG                         GTTCGAATCTACTTATTGACAATGAGGGAAATTTAAA
genomic: TGAATCAAGTGCTTCACCGTGATATAAAAGgtgaatatat ... attggtgcagGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAA
EST: gi|86059279|gb|DR355036.1|DR355036
EST:     TGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAG                         GTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
genomic: TGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtgaatatat ... attggtgcagGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
EST: gi|47829487|gb|CK119171.1|CK119171
EST:     TGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAG                         GTTCGAATCTACTTATTGNACA-TGAGGGAAATTTAAAGCTAGCGGATTTT
genomic: TGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtgaatatat ... attggtgcagGTTCGAATCTACTTATTG-ACAATGAGGGAAATTTAAAGCTAGCGGATTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accattttgttctcttgtctttatttgctagttaacctataatatattggtgcagGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTGGGCTTGCTCGGTCATATTCTCATGATCATACTGGAAACCTCACAAATCG
                             agttaac  putative branch site (score: 3)
                               ttaacctataatatat  TA-rich tract