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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattatcttccgatggataaatctttccggtaatgaatggtttttgccaaagcttttcctagctgatcatgtaccctgtgttacaacagttacatttattattcaactattaattcattgaaaaaatttcagGGTTTGTGGATGAATATTGCCAAAGATCAGTTGTTTTGTCTTCTTGGACCTAATGGCGCGGGGAAAACAACTACTATTAGTTGTTTGACTGGCATAAATC

Basic information

species Arabidopsis thaliana
transcript AT5G61690.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G61690.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G142249_T01 (Zea mays), 3'ss of exon 8
gtatattatcttccgatggataaatctttccggtaatgaatggtttttgccaaagcttttcctagctgatcatgtaccctgtgttacaacagttacatttattattcaactattaattcattgaaaaaat-ttcagGGTTTGTGGATGAATATTGCCAAAGATCAGTTGTTTTGTCTTCTTGGACCTAATGGCGCGGGGAAAACAACTACTATTAGTTGTTTGACTGGCATAAATC
                                                   ||   ||    ||| |  | |  ||   |   |  ||||  |     | || ||   | |||| |||   | |||   | ||||||| || ||| ||||  |||  || || ||| | |||||||||||||| || ||||| || || ||||||||||| || |||||| ||||||| || |  |
-------------------------------------------------gtaagttttcaattagtttttgacataaaatacat-gcaactatgcttgtcatcatctgattattcattgcctaaaactttattcagGGCTTATGGGTGAACCTTGAGAAGGACCAGCTATTTTGTCTTCTTGGTCCCAATGGAGCTGGAAAAACAACTACAATCAGTTGTCTGACTGGAATCACAC

upper sequence: AT5G61690.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA04G34140.2 (Glycine max), 3'ss of exon 8
gtatattatcttccgatggataaatctttccggtaatgaatggtttttgccaaagcttttcctagctgatcatgtaccctgtgttacaacagttacatttattattcaactattaattcattgaaaaaatttcagGGTTTGTGGATGAATATTGCCAAAGATCAGTTGTTTTGTCTTCTTGGACCTAATGGCGCGGGGAAAACAACTACTATTAGTTGTTTGACTGGCATAAATC
                    | ||| || |   || |  |||  |||   ||| ||        |  |||    |  ||  | |||  |   | |    || | | | | | | || | |||        |||||||||||||| ||||  |||| || |||||||| ||||||||||| ||||| ||||| || || ||||| ||  |||||| ||||||| | || |||| ||
------------------tctgaatgttccacatatttcatg--tttcaacaaggcaacatggtggagat----tgacccattttaggatgatgaa---taatgtgctattctgaaattatt--------ttcagGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCCAATGGAGCTGGAAAAACTACAGCTATTAATTGTTTGGCAGGGATAACTC

upper sequence: AT5G61690.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA06G20360.2 (Glycine max), 3'ss of exon 8
gtatattatcttccgatggataaatctttccggtaatgaatggtttttgccaaagcttttcctagctgatcatgtaccctgtgttacaacagttacatttattattcaactattaattcattgaaaaaatttcagGGTTTGTGGATGAATATTGCCAAAGATCAGTTGTTTTGTCTTCTTGGACCTAATGGCGCGGGGAAAACAACTACTATTAGTTGTTTGACTGGCATAAATC
                                 || |  ||  ||||  |  ||  |    |    |     | |     |  | ||     |||   | || ||  |  |  || |      ||  | ||||||||||||||| ||||  |||| || |||||||| ||||||||||| ||||| ||||| || || ||||| ||  |||||| ||| ||||| ||  ||| ||
---------------------------------tactttattattttatctgaatgtcccacatatttcatgtttgtggagattgacctatattaggatgatgatcaatgtgctattctg--aaattattttcagGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCCAATGGAGCTGGAAAAACTACAGCTATTAATTGCTTGACAGGGGTAACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttacaacagttacatttattattcaactattaattcattgaaaaaatttcagGGTTTGTGGATGAATATTGCCAAAGATCAGTTGTTTTGTCTTCTTGGACCTAATGGCGCGGGGAAAACAACTACTATTAGTTGTTTGACTGGCATAAATC
                              tattaat  putative branch site (score: 2)
            ttacatttattattca  TA-rich tract