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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcaataacactaataaacaagaataatattttaagatatgcatcatgtgaatatgttcttacctttcttgtttttgcaattgcagTGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAGCGATTGTGTCTTATTAGGACTTCTAGATTAAAAGTGCTCTCTTTTTGTT

Basic information

species Arabidopsis thaliana
transcript AT5G54900.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124791729|gb|EH881408.1|EH881408
EST:     CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAG                         TGAAACATCAACATC
genomic: CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAGgtaactcaat ... gcaattgcagTGAAACATCAACATC
EST: gi|116479564|gb|EG522156.1|EG522156
EST:     CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAG                         TGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG
genomic: CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAGgtaactcaat ... gcaattgcagTGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG
EST: gi|125067286|gb|EL133846.1|EL133846
EST:     CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAG                         TGAAACATCAACATCAGCTATTTCTACCAA
genomic: CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAGgtaactcaat ... gcaattgcagTGAAACATCAACATCAGCTATTTCTACCAA
EST: gi|86083467|gb|DR379226.1|DR379226
EST:     CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAG                         TGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG
genomic: CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAGgtaactcaat ... gcaattgcagTGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG
EST: gi|116479553|gb|EG522145.1|EG522145
EST:     CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAG                         TGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG
genomic: CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAGgtaactcaat ... gcaattgcagTGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG
EST: gi|164192384|gb|ES024428.1|ES024428
EST:     AGCAACGTCAG                         TGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG
genomic: AGCAACGTCAGgtaactcaat ... gcaattgcagTGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagatatgcatcatgtgaatatgttcttacctttcttgtttttgcaattgcagTGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAGCGATTGTGTCTTATTAGGACTTCTAGATTAAAAGTGCTCTCTTTTTGTT
                         ttcttac  putative branch site (score: 2)
                         ttcttacctttcttgt  CT-rich tract
                   aatatgtt  TA-rich tract