1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagatttaagagtgttcagtttgtttttttattggtttatgaaatacagaaactgatttgcaattgtgacttccactatgtactgagtgttcagcttttcgttaaccctctaaaatacactcctttttgactaaatcgtgacttccactatgctattgcagAGGGTTAACGAAAAGCTGAGTAAATTGGAGAGGAAGAATTTTAAAGACGGATCTGCCATAAAAGTAGCTGTTGTTGGCTGCGGTTATGCAGGAGTAGAGT
species | Arabidopsis thaliana |
transcript | AT5G08740.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCGGTGCAATGGAGTTGGCTTTCCCATTCTACACTCTTGAAGATGCCATT AGGGTTAACGAAAAGCTGAGTAAATTGGAGAGGAAGAATTTTAAAGACGGAEST: gi|86063794|gb|DR359551.1|DR359551
genomic: CCGGTGCAATGGAGTTGGCTTTCCCATTCTACACTCTTGAAGATGCCATTgtaagattta ... gctattgcagAGGGTTAACGAAAAGCTGAGTAAATTGGAGAGGAAGAATTTTAAAGACGGA
EST: CCGGTGCAATGGAGTTGGCTTTCCCATTCTACACTCTTGAAGATGCCATT AGGGTTAACGAAAAGCTGAGTAAATTGGAGAGGAAGAATTTTAAAGACGGAEST: gi|124788055|gb|EH877734.1|EH877734
genomic: CCGGTGCAATGGAGTTGGCTTTCCCATTCTACACTCTTGAAGATGCCATTgtaagattta ... gctattgcagAGGGTTAACGAAAAGCTGAGTAAATTGGAGAGGAAGAATTTTAAAGACGGA
EST: CTTTCCCATTCTACACTCTTGAAGATGCCATT AGGGTTAACGAAAAGCTGAGTAAATTGGAGAGGAAGAATTTTAAAGACGGA
genomic: CTTTCCCATTCTACACTCTTGAAGATGCCATTgtaagattta ... gctattgcagAGGGTTAACGAAAAGCTGAGTAAATTGGAGAGGAAGAATTTTAAAGACGGA
cctctaaaatacactcctttttgactaaatcgtgacttccactatgctattgcagAGGGTTAACGAAAAGCTGAGTAAATTGGAGAGGAAGAATTTTAAAGACGGATCTGCCATAAAAGTAGCTGTTGTTGGCTGCGGTTATGCAGGAGTAGAGT
gactaaa putative branch site (score: 2)
aaaataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatttaagagtgttcagtttgtttttttattggtttatgaaatacagaaactgatttgcaattgtgacttccactatgtactgagtgttcagcttttcgttaaccctctaaaatacactcctttttgactaaatcgtgacttccactatgctattgcagAGGGTTAACGAAAAGCTGAGTAAATTGGAGAGGAAGAATTTTAAAGACGGATCTGCCATAAAAGTAGCTGTTGTTGGCTGCGGTTATGCAGGAGTAGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT