1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagttgatacaagccaaaccactaccatagaattctcatcgtattccctttgcttaacacctttcctttttgttgtgtctttgaaaagTGCCTCGGCTTTTCACCGCTGGCATTGCTTCCTTCTACGAGGGTTACTATGCCAACAAAGGAATTAACATTGTCAAAGGCACTGTTGCATCTGGTTTCAC
species | Arabidopsis thaliana |
transcript | AT5G03630.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGGCTAACAACCTCGACGTTACCATGGTTTATCCAGAACCTTGGTGCA TGCCTCGGCTTTTCACCGCTGGCATTGCTTCCTTCTACGAGGGTTACTATGEST: gi|124997914|gb|EL070183.1|EL070183
genomic: AAGGCTAACAACCTCGACGTTACCATGGTTTATCCAGAACCTTGGTGCAgtaagttgat ... ctttgaaaagTGCCTCGGCTTTTCACCGCTGGCATTGCTTCCTTCTACGAGGGTTACTATG
EST: AACCTTGGTGCA TGCCTCGGCTTTTCACCGCTGGCATTGCTTCCTTCTACGAGGGTTACTATGEST: gi|124725327|gb|EH816729.1|EH816729
genomic: AACCTTGGTGCAgtaagttgat ... ctttgaaaagTGCCTCGGCTTTTCACCGCTGGCATTGCTTCCTTCTACGAGGGTTACTATG
EST: GAAGGCTAACAACCTCGACGTTACCATGGTTTATCCAGAACCTTGGTGCA TGCCTCGGCTTTTCACCGCTGGCA
genomic: GAAGGCTAACAACCTCGACGTTACCATGGTTTATCCAGAACCTTGGTGCAgtaagttgat ... ctttgaaaagTGCCTCGGCTTTTCACCGCTGGCA
tctcatcgtattccctttgcttaacacctttcctttttgttgtgtctttgaaaagTGCCTCGGCTTTTCACCGCTGGCATTGCTTCCTTCTACGAGGGTTACTATGCCAACAAAGGAATTAACATTGTCAAAGGCACTGTTGCATCTGGTTTCAC
gcttaac putative branch site (score: 3)
cctttcctttttgttg CT-rich tract
tttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgatacaagccaaaccactaccatagaattctcatcgtattccctttgcttaacacctttcctttttgttgtgtctttgaaaagTGCCTCGGCTTTTCACCGCTGGCATTGCTTCCTTCTACGAGGGTTACTATGCCAACAAAGGAATTAACATTGTCAAAGGCACTGTTGCATCTGGTTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA