1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaatattttaattcctttaattccttaaaggttttttttttcacaaatcccatctcattttctacatacttatttcttttgatacctcagGGTTCCTTGAGGGCAGCATCCCAATAGAAATACTGAAGAGTATGTCGTCGGATAAGAAAAGAAAATCCAAAAAGAACAAAAGGCACAAGAAGCATTCATC
species | Arabidopsis thaliana |
transcript | AT4G19190.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATATATTTGACGAATATGGAG GGTTCCTTGAGGGCAGCATCCCA-TAGAAATACTGAAGAGTATGTCGTEST: gi|125021655|gb|EL093924.1|EL093924
genomic: ATATATTTGACGAATATGGAGgtgaatattt ... gatacctcagGGTTCCTTGAGGGCAGCATCCCAATAGAAATACTGAAGAGTATGTCGT
EST: ACGAATATGGAG GGTTCCTTGAGGGCAGCATCCCAATAGAAATACTGAAGAGTATGTCGT
genomic: ACGAATATGGAGgtgaatattt ... gatacctcagGGTTCCTTGAGGGCAGCATCCCAATAGAAATACTGAAGAGTATGTCGT
ttttttcacaaatcccatctcattttctacatacttatttcttttgatacctcagGGTTCCTTGAGGGCAGCATCCCAATAGAAATACTGAAGAGTATGTCGTCGGATAAGAAAAGAAAATCCAAAAAGAACAAAAGGCACAAGAAGCATTCATC
ttttgat putative branch site (score: 4)
tttcttttg CT-rich tract
atacttatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatattttaattcctttaattccttaaaggttttttttttcacaaatcccatctcattttctacatacttatttcttttgatacctcagGGTTCCTTGAGGGCAGCATCCCAATAGAAATACTGAAGAGTATGTCGTCGGATAAGAAAAGAAAATCCAAAAAGAACAAAAGGCACAAGAAGCATTCATC
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