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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgagtatcatcatatccgttatccccttttgctcattcatcgtatcactttgaaataaatttcttatatatattttcttggtccagGTTTCTTATATTAGCCAAAATTGGCCTGTTCAACACGTGGCAGCTAGCGAGGATGGGAAATACTTGGCGGTTGCTGGTTTACATGGCCTGATTTTGTATG

Basic information

species Arabidopsis thaliana
transcript AT3G61480.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61480.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA18G47050.1 (Glycine max), 3'ss of exon 6
gttgagtatcatcatatccgttatc-cccttttgctcattcatcgtatcactttgaaataaatttcttatatatattttc----ttggtccagGTTTCTTATATTAGCCAAAATTGGCCTGTTCAACACGTGGCAGCTAGCGAGGATGGGAAATACTTGGCGGTTGCTGGTTTACATGGCCTGATTTTGTATG
           | || |   | ||  ||   |||   |  || |   || |  |||| |  || ||   | || | |||     || || |||||||||||||||  |||||| |||||||||||||| |||||||||||| ||||||| |  ||||| || ||||||||| | |||||  |||| |||||||
----------gttatgtgtttgattgccaaattgtgaacacagcaattcccactgaa-tggatatcccttctaaagtttaaaagtttgtgcagGTTTCTTATATTTCCCAAAACTGGCCTGTTCAACATGTGGCAGCTAGCCAGGATGGCATGTACTTAGCTGTTGCTGGTCTTCATGGTTTGATATTGTATG

upper sequence: AT3G61480.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA09G39270.1 (Glycine max), 3'ss of exon 6
gttgagtatcatcatatccgttatccccttttgctcattcatcgtatcactttgaaataaatttcttatatatattttc----ttggtccagGTTTCTTATATTAGCCAAAATTGGCCTGTTCAACACGTGGCAGCTAGCGAGGATGGGAAATACTTGGCGGTTGCTGGTTTACATGGCCTGATTTTGTATG
        | | | | |  | | |  |   |||  || | ||  | |||||    |||  || ||   | || | |||     || ||  ||||||||||||||  |||||| |||||||||||||| |||||||||||| ||||||| |  ||||| || ||||||||| | || ||  |||| |||||||
-------gtta-cgtgtttgat-tgtcaaattgaacagtaat--tttcact---gaatggatatcccttctaaagtttaaaagtttgtgtagGTTTCTTATATTTCCCAAAACTGGCCTGTTCAACATGTGGCAGCTAGCCAGGATGGAATGTACTTAGCAGTTGCTGGTCTTCACGGTTTGATATTGTATG

upper sequence: AT3G61480.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 6
gttgagtatcatcatatccgttatccccttttgctcattcatcgtatcactttgaaataaatttcttatatatattttcttggtccagGTTTCTTATATTAGCCAAAATTGGCCTGTTCAACACGTGGCAGCTAGCGAGGATGGGAAATACTTGGCGGTTGCTGGTTTACATGGCCTGATTTTGTATG
|||  || |  | |  |  ||  |      ||  |  ||  | || ||  ||| |   |   | || |||||  | |  |||| | |||||||||||||   ||||||||||||||||||||| ||||  |||||| |||||||||  ||||| || ||||||||| | |||||| | || || || |
gttacgtgtt-taaattatgtacttgataattcgttgtttttagtctctattttattaatgctcctaatatagttctctttgggctagGTTTCTTATATCTCCCAAAATTGGCCTGTTCAACATGTGGTGGCTAGCAAGGATGGGATGTACTTAGCAGTTGCTGGTCTCCATGGCTTAATCTTATACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcattcatcgtatcactttgaaataaatttcttatatatattttcttggtccagGTTTCTTATATTAGCCAAAATTGGCCTGTTCAACACGTGGCAGCTAGCGAGGATGGGAAATACTTGGCGGTTGCTGGTTTACATGGCCTGATTTTGTATG
                                       tattttctt  CT-rich tract
           tatcactttgaaataa  TA-rich tract