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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaattgctaacttccccagtccaatattcctctatatattacaagtgcaaagacttgtctgcaatgatatcacaagggattgtggaaacattttcaacttgatatcacattttggagaagtagtaaaggacacagaaattgaattgttaactgattataaatctgttactgccttgttttgttgtcttcttctagAATCATGGGAACTCCGTACGAGGATACATGGCGTGGGGTAACTTCTCTACCGGATTATAAATCTGCTTTCCCTAAATGGAAACCAACG

Basic information

species Arabidopsis thaliana
transcript AT3G48750.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164229409|gb|ES006550.1|ES006550
EST:     CCCTTATTTCCTGGAGACTCCGAGATTGATCAACTCTTCAAGATTTTCAG                         AATCATGGGAACTCCGTACGAGGA
genomic: CCCTTATTTCCTGGAGACTCCGAGATTGATCAACTCTTCAAGATTTTCAGgtttaattgc ... cttcttctagAATCATGGGAACTCCGTACGAGGA
EST: gi|164212896|gb|ES063829.1|ES063829
EST:     GATTGATCAACTCTTCAAGATTTTCAG                         AATCATGGGAACTCCGTACGAGGATACATGGCGTGGGGTAACTTCTCTACC
genomic: GATTGATCAACTCTTCAAGATTTTCAGgtttaattgc ... cttcttctagAATCATGGGAACTCCGTACGAGGATACATGGCGTGGGGTAACTTCTCTACC
EST: gi|164016393|gb|ES194419.1|ES194419
EST:     CTTATTTCCTGGAGACTCCGTAGTATTGATCAACTCTTCAAGATTTTCAG                         AATCATGGGAACTCCGTACGAGGATACATGGCGTGGGGTAACTTCTC
genomic: CTTATTTCCTGGAGACTCCG-AG-ATTGATCAACTCTTCAAGATTTTCAGgtttaattgc ... cttcttctagAATCATGGGAACTCCGTACGAGGATACATGGCGTGGGGTAACTTCTC
EST: gi|125253886|gb|EL267971.1|EL267971
EST:     CTTTATTTCCTGGTAGACTCCGAGATTGATCAACTCTTCAAGATTTTCAG                         AATCATGGGAACTCCGTACGAGGATACA
genomic: C-TTATTTCCTGG-AGACTCCGAGATTGATCAACTCTTCAAGATTTTCAGgtttaattgc ... cttcttctagAATCATGGGAACTCCGTACGAGGATACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattgttaactgattataaatctgttactgccttgttttgttgtcttcttctagAATCATGGGAACTCCGTACGAGGATACATGGCGTGGGGTAACTTCTCTACCGGATTATAAATCTGCTTTCCCTAAATGGAAACCAACG
                               ccttgttttgttgtct  CT-rich tract
      ttaactgattataaat  TA-rich tract