1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttaacttttaattcttggaattttgaaatgcttcaagtatgattaccttttgatggttggctaatgagaccgtttaacgatgtgattaacagGCTGAGGACGAATTTGGATTACCAGCAGTGCCACGAGCTTCTCTCCGGGGTTAAGTTCCGGCGATTCTCTTGTTGATTGGAGCTACTAAGCTTTTTTATT
species | Arabidopsis thaliana |
transcript | AT3G10640.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCCTGCAGCACCAACAGGACACAATGGAGCTCCACATGGAAGAGCTCAG GCTGAGGACGAATTTGGATTACCAGCAGTGCCACGEST: gi|19741575|gb|AU226928.1|AU226928
genomic: TGCCTGCAGCACCAACAGGACACAATGGAGCTCCACATGGAAGAGCTCAGgttaactttt ... tgattaacagGCTGAGGACGAATTTGGATTACCAGCAGTGCCACG
EST: TGCCTGCAGCACCAACAGGACACAATGGAGCTCCACATGGAAGAGCTCAG GCTGAGGACGAATTTGGATTACCAGCAGTGCCACGAGCTTCTCTCCGGGGTEST: gi|125076782|gb|EL139810.1|EL139810
genomic: TGCCTGCAGCACCAACAGGACACAATGGAGCTCCACATGGAAGAGCTCAGgttaactttt ... tgattaacagGCTGAGGACGAATTTGGATTACCAGCAGTGCCACGAGCTTCTCTCCGGGGT
EST: TGCCTGCAGCACCAACAGGACACAATGGAGCTCCACATGGAAGAGCTCAG GCTGAGGACGA
genomic: TGCCTGCAGCACCAACAGGACACAATGGAGCTCCACATGGAAGAGCTCAGgttaactttt ... tgattaacagGCTGAGGACGA
tatgattaccttttgatggttggctaatgagaccgtttaacgatgtgattaacagGCTGAGGACGAATTTGGATTACCAGCAGTGCCACGAGCTTCTCTCCGGGGTTAAGTTCCGGCGATTCTCTTGTTGATTGGAGCTACTAAGCTTTTTTATT
gtttaac putative branch site (score: 3)
ttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaacttttaattcttggaattttgaaatgcttcaagtatgattaccttttgatggttggctaatgagaccgtttaacgatgtgattaacagGCTGAGGACGAATTTGGATTACCAGCAGTGCCACGAGCTTCTCTCCGGGGTTAAGTTCCGGCGATTCTCTTGTTGATTGGAGCTACTAAGCTTTTTTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT