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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgttgatctctatatacttagtagctgtatggtgaactgtttaaaccactgccatctcagagaccagggaatttaaaatagcaatatatacttttaacagGTGACGGAGCAGCCCTCGCTTCTAGAAGGTGGGGAACTACGATCCTATCAATTAGAAGGGCTTCAATGGATGGTTTCTCTATTCAACAATAACCTCAATG

Basic information

species Arabidopsis thaliana
transcript AT3G06010.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06010.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os05g05230.1 (Oryza sativa), 3'ss of exon 6
--gtaacgttgatctctatatacttagtagctgtatggtgaactgtttaaaccactgccatctcagagaccagggaatttaaaatagcaatatatacttttaacagGTGACGGAGCAGCCCTCGCTTCTAGAAGGTGGGGAACTACGATCCTATCAATTAGAAGGGCTTCAATGGATGGTTTCTCTATTCAACAATAACCTCAATG
   |  | |  |||  || |     | | |  |     || ||| |||  ||   ||| |      | | ||   | |||  | |  |  | | |   ||||  |||| ||||| || || ||   ||| |||||||||||  || || | ||||||||||| || || ||||||||| ||||| |||||||||||||  | ||||
ccttttcctgcatcattaca-gtacaattgtagcgctctgcact-tttggactcatgcaact---aaaaacaaacattttttattccctttctttgaattta-tagGTAACGGAACAACCATCAGCTCTTGAAGGTGGGGAGTTAAGACCATATCAATTAGAGGGCCTGCAATGGATGCTTTCTTTATTCAACAATAATTTGAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccactgccatctcagagaccagggaatttaaaatagcaatatatacttttaacagGTGACGGAGCAGCCCTCGCTTCTAGAAGGTGGGGAACTACGATCCTATCAATTAGAAGGGCTTCAATGGATGGTTTCTCTATTCAACAATAACCTCAATG
                                           tactttt  CT-rich tract
                        aatttaaaatagcaat  TA-rich tract