Sequence
atgc intronic sequence ATGC exonic sequencegtaaagaatgataacctgttcttcttctcatctgtactactatttgtgttctctaaattttctgaaatactttttgcagATAAGTTTCTCGGATTGGTTCCTGTCAAAAGGTGGGACACGGGCAAGTATCCAGAGAATGTGGGATCCTGTTGCTTATGCTCTAGGTTTCATAGACTGCG
Basic information
species | Arabidopsis thaliana |
transcript | AT3G04870.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G04870.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os07g10490.1 (Oryza sativa), 3'ss of exon 6
--------------gtaaagaatgataacctgttcttcttc-----tcatctgtac-tactatttgtgttctc-taaattttctgaaatactttttgcagATAAGTTTCTCGGATTGGTTCCTGTCAAAAGGTGGGACACGGGCAAGTATCCAGAGAATGTGGGATCCTGTTGCTTATGCTCTAGGTTTCATAGACTGCG
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taaacatatgcactataaatatcgtagaactgttattaatgaaaaatcagaggtagatagcttctatctaaaggttaatttgcaagtgtacttttttcagGTAAGTTTCAGCGATTGGTTCTTGTCGAAAGGTGGTACTCGAGAGAGCATCACAAGGATGTGGGATCCTGTTGCCTATGCTCTTGGTTTCATTGACTGTG
upper sequence: AT3G04870.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G454952_T01 (Zea mays), 3'ss of exon 6
----------------------------------------------------------------------------------------------gtaaagaa-tgataacctgttcttcttctcatctgtactactatttgtgttctctaaattttctgaaatactttttgcagATAAGTTTCTCGGATTGGTTCCTGTCAAAAGGTGGGACACGGGCAAGTATCCAGAGAATGTGGGATCCTGTTGCTTATGCTCTAGGTTTCATAGACTGCG
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gtaagtatcccttgcttttatttcatatccattaagagtgtgcatcaagagcattcatttgcaatagtcagtatcttttcaaaatgtttttgttctaactcgctgataactaaactttttgtcaattttctttccctcaaacactcgttaattttattttaacccattt--cagGTAAGTTTCAGTGATTGGTTCATGTCCAAAGGGGGTACTCGGGAGAGTATCACAAGAATGTGGGATCCTGTTGCTTACGCTTTGGGTTTCATTGACTGTG
upper sequence: AT3G04870.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------gtaaagaatgataacctgttcttcttctcatctgtac-tactatttgtgttctctaaattttctgaaatactttttgcagATAAGTTTCTCGGATTGGTTCCTGTCAAAAGGTGGGACACGGGCAAGTATCCAGAGAATGTGGGATCCTGTTGCTTATGCTCTAGGTTTCATAGACTGCG
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atagttatcccagtctactttatgtacatg-tgatgtggttatctggttatgaaccttatgtaattgttgtcttacttaaaatctc--atttgttttatacagATAAGCTTCTCTGATTGGTTCCTGTCCAAAGGTGGGACACGCATGAGCATCCAGAGAATGTGGGATCCTGTTGCTTATGCCCTCGGGTTTATTGACTGTG
upper sequence: AT3G04870.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: PP1S211_145V6.1 (Physcomitrella patens), 3'ss of exon 6
---------------------gtaaagaatgataacc-tgttcttcttctcatctgtactactatttgtgttctctaaattttctgaaatactttttgcagATAAGTTTCTCGGATTGGTTCCTGTCAAAAGGTGGGACACGGGCAAGTATCCAGAGAATGTGGGATCCTGTTGCTTATGCTCTAGGTTTCATAGACTGCG
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gtagttaaccatcgaaaactcttaagaaacggaaaggatctgcttcttttttcaaggcctaaagtttaagaagcattagtgatttatgacgatttg-gcagGTGAGCTTTACAGATTGGTATATGTCTCATGGTGGGTCTCGCATGAGCATCAAAAGGTTGTGGAACCCTGTTGCTTATGCTCTGGGTTTCATAGACTGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86024807|gb|DR320560.1|DR320560EST: CTCTTGTCGACCCCGATGGAGCAATGAGAGACATTCGCAACCTTGACAGC ATAAGTTTCTCGGATTGGTTCCTGTCAAAAGGTGGGACACGGGCAAGTATC
genomic: CTCTTGTCGACCCCGATGGAGCAATGAGAGACATTCGCAACCTTGACAGCgtaaagaatg ... ctttttgcagATAAGTTTCTCGGATTGGTTCCTGTCAAAAGGTGGGACACGGGCAAGTATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctcatctgtactactatttgtgttctctaaattttctgaaatactttttgcagATAAGTTTCTCGGATTGGTTCCTGTCAAAAGGTGGGACACGGGCAAGTATCCAGAGAATGTGGGATCCTGTTGCTTATGCTCTAGGTTTCATAGACTGCG
ctctaaa putative branch site (score: 3)
tacttttt putative PPT
taaattttctgaaata TA-rich tract