1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tttctagacctcttcacattcctattgcatttgcacttgggctttatggtctatctgctctgaatcctaattctttccaaacttaccttgtttctggcagTCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGATGCTACACCTTTGACACTAGGACAAGAATTTGGTGGCTATGCTACTCAA
species | Arabidopsis thaliana |
transcript | AT2G47510.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGAGGCTCATCCCTAGTTTAAAAACTTTGCATAGCACTTTGGAATCTAAG TCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGATEST: gi|116457541|gb|EG500133.1|EG500133
genomic: CGAGGCTCATCCCTAGTTTAAAAACTTTGCATAGCACTTTGGAATCTAAGgtctgacttt ... tttctggcagTCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGAT
EST: CGAGGCTCATCCCTAGTTTAAAAACTTTGCATAGCACTTTGGAATCTAAG TCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGATEST: gi|164221850|gb|ES060710.1|ES060710
genomic: CGAGGCTCATCCCTAGTTTAAAAACTTTGCATAGCACTTTGGAATCTAAGgtctgacttt ... tttctggcagTCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGAT
EST: CTTTGCATAGCACTTTGGAATCTAAG TCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGAT
genomic: CTTTGCATAGCACTTTGGAATCTAAGgtctgacttt ... tttctggcagTCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGAT
atggtctatctgctctgaatcctaattctttccaaacttaccttgtttctggcagTCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGATGCTACACCTTTGACACTAGGACAAGAATTTGGTGGCTATGCTACTCAA
aacttac putative branch site (score: 2)
cttaccttgtttct CT-rich tract
taattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctagacctcttcacattcctattgcatttgcacttgggctttatggtctatctgctctgaatcctaattctttccaaacttaccttgtttctggcagTCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGATGCTACACCTTTGACACTAGGACAAGAATTTGGTGGCTATGCTACTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -ctagacc
- - - - - - - cacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctgctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactta