Sequence
atgc intronic sequence ATGC exonic sequencegtaaggattcccaccttgttactttatcaatttaaggaattgcggatttaatttgctctgaatgaatatgtgttgcagGAACTAGAAGATCCTCTCATTCTTATCCACGAGAAGAAAATTTCCAATATAAACGCAATGGTGAAAGTATTAGAACTGGCCCTCAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G33210.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G33210.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv05s0051g00340.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------------------------------------------------------gtaagga-ttcccaccttgttactttatcaatttaaggaattgcgg---atttaatttgctctgaatgaa------tatgtgttgcagGAACTAGAAGATCCTCTCATTCTTATCCACGAGAAGAAAATTTCCAATATAAACGCAATGGTGAAAGTATTAGAACTGGCCCTCAAG
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gtaagtttttttttccttgtgactcgtttgattgacatatgtctggatgctgttacttcataattgaagtaatatgaaagaagcttatgtttcagtcactagctggtttaagtaacatcaacttgttcacttaaaactgagtgtccatatctatatactacagGAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116483327|gb|EG525919.1|EG525919EST: GGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGT GAACTAGAAGATCCTCTCATTCTTATCCACGAGAAGAAAATTTCCAATATA
genomic: GGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGTgtaaggattc ... tgtgttgcagGAACTAGAAGATCCTCTCATTCTTATCCACGAGAAGAAAATTTCCAATATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatcaatttaaggaattgcggatttaatttgctctgaatgaatatgtgttgcagGAACTAGAAGATCCTCTCATTCTTATCCACGAGAAGAAAATTTCCAATATAAACGCAATGGTGAAAGTATTAGAACTGGCCCTCAAG
atttaat putative branch site (score: 4)
atttaattt TA-rich tract