Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctttgaaacctcgttctaagtgtctcatctgtttactcctctcattttgcggtgttccataataacagGCGAGTCAGGCTGCATTATGCACTTCAGGAACAGTTGCTGTTGAGTTGCAGCTTGCTCATCTACCTTCCCTTGTTGCTTACCGAGCACATTTTCTAACAG

Basic information

species Arabidopsis thaliana
transcript AT2G04560.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G04560.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv12s0059g01600.t01 (Vitis vinifera), 3'ss of exon 7
-----------------------gtaagtctt-tgaaacctcgttctaagtgtctcatctg-tttactcctctcattttgcggtgttcca-taataacagGCGAGTCAGGCTGCATTATGCACTTCAGGAACAGTTGCTGTTGAGTTGCAGCTTGCTCATCTACCTTCCCTTGTTGCTTACCGAGCACATTTTCTAACAG
                       | |    || |   || | || |   |  |||     | || |    |||   |  || |  ||  | || |  ||||| ||   || ||||||||||||||| |||||||||||||||||| ||||||| || |  || || |   |||||||||| ||||| ||||| ||||| |
aaaagcctggatgcccatcttatgaacacattatactacttagtgcatggcttctggctagattcatgtttctttctaagctgaattggactacttgcagGCAAGCAGGGTTGCATTATGCACTTCTGGAACAGTTGCTGTTGAGATGCAGCTGGCACGGCTGCCATGTGTTGTTGCTTATCGAGCTCATTTCCTAACTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaagtgtctcatctgtttactcctctcattttgcggtgttccataataacagGCGAGTCAGGCTGCATTATGCACTTCAGGAACAGTTGCTGTTGAGTTGCAGCTTGCTCATCTACCTTCCCTTGTTGCTTACCGAGCACATTTTCTAACAG
                                             ataataaca  TA-rich tract