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gtagacacttataaatattaatatgatttatgtagcagaaaggtgttgatatgaaactcataacatagaaaaatcacagATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTTCCAGCCTTACTTGGGTTTATAGTGCAGATGGTTGATTTTGG
species | Arabidopsis thaliana |
transcript | AT1G73020.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTGCACAAACCAACCAATTGATCAGATCTACTCTTACTTTGGTGCAAAG ATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTTEST: gi|116435864|gb|EG478456.1|EG478456
genomic: ACTGCACAAACCAACCAATTGATCAGATCTACTCTTACTTTGGTGCAAAGgtagacactt ... aaaatcacagATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTT
EST: ACTGCACAAACCAACCAATTGATCAGATCTACTCTTACTTTGGTGCAAAG ATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTTEST: gi|116436358|gb|EG478950.1|EG478950
genomic: ACTGCACAAACCAACCAATTGATCAGATCTACTCTTACTTTGGTGCAAAGgtagacactt ... aaaatcacagATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTT
EST: ACTGCACAAACCAACCAATTGATCAGATCTACTCTTACTTTGGTGCAAAG ATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATAEST: gi|116436397|gb|EG478989.1|EG478989
genomic: ACTGCACAAACCAACCAATTGATCAGATCTACTCTTACTTTGGTGCAAAGgtagacactt ... aaaatcacagATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATA
EST: ACTGCACAAACCAACCAATTGATCAGATCTACTCTTACTTTGGTGCAAAG ATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTTEST: gi|116436360|gb|EG478952.1|EG478952
genomic: ACTGCACAAACCAACCAATTGATCAGATCTACTCTTACTTTGGTGCAAAGgtagacactt ... aaaatcacagATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTT
EST: ACTGCACAAACCAACCAATTGATCAGATCTACTCTTACTTTGGTGCAAAG ATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTT
genomic: ACTGCACAAACCAACCAATTGATCAGATCTACTCTTACTTTGGTGCAAAGgtagacactt ... aaaatcacagATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTT
gatttatgtagcagaaaggtgttgatatgaaactcataacatagaaaaatcacagATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTTCCAGCCTTACTTGGGTTTATAGTGCAGATGGTTGATTTTGG
tcataac putative branch site (score: 2)
ataacatagaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagacacttataaatattaatatgatttatgtagcagaaaggtgttgatatgaaactcataacatagaaaaatcacagATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTTCCAGCCTTACTTGGGTTTATAGTGCAGATGGTTGATTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG