1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atagttaatagcaattcaagtgtgtgtatgtctcttcgatctcatttgcatctactttgtcttatttaaagctattgtgttggaaatgttggggtttcagGGAATATGGCTCTGTGAACACCGTGATGCTCCAACAGCACGCAGAGTTGTGGTCACTCTCAATGGAATCTAGAGATGTCTCTTCACGTTAGATGGCTTGT
species | Arabidopsis thaliana |
transcript | AT1G21065.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATGGGAACTTGGCAG GGAATATGGCTCTGTGAACACCGTGATGCTCCAAEST: gi|86078659|gb|DR374416.1|DR374416
genomic: CATGGGAACTTGGCAGgtaataaatt ... ggggtttcagGGAATATGGCTCTGTGAACACCGTGATGCTCCAA
EST: AATCCCAATAACAAAAGGAAAACTCAGCATGGGAACTTGGCAG GGAATATGGCTCTGTGAACACCGTGATGCTCCAACAGCACGCAGAGTTGTGEST: gi|164235466|gb|ES093209.1|ES093209
genomic: AATCCCAATAACAAAAGGAAAACTCAGCATGGGAACTTGGCAGgtaataaatt ... ggggtttcagGGAATATGGCTCTGTGAACACCGTGATGCTCCAACAGCACGCAGAGTTGTG
EST: AATCCCAATAACAAAAGGAAAACTCAGCATGGGAACTTGGCAG GGAATATGGCTC
genomic: AATCCCAATAACAAAAGGAAAACTCAGCATGGGAACTTGGCAGgtaataaatt ... ggggtttcagGGAATATGGCTC
ttgcatctactttgtcttatttaaagctattgtgttggaaatgttggggtttcagGGAATATGGCTCTGTGAACACCGTGATGCTCCAACAGCACGCAGAGTTGTGGTCACTCTCAATGGAATCTAGAGATGTCTCTTCACGTTAGATGGCTTGT
tttgtcttatttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagttaatagcaattcaagtgtgtgtatgtctcttcgatctcatttgcatctactttgtcttatttaaagctattgtgttggaaatgttggggtttcagGGAATATGGCTCTGTGAACACCGTGATGCTCCAACAGCACGCAGAGTTGTGGTCACTCTCAATGGAATCTAGAGATGTCTCTTCACGTTAGATGGCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - -caattca
- - - - - - - - - - - - - - - tctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttaaagc