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gtacgtaaatttctatttaatttactttactgttatttttaaaacacatgtattaaattttcgttatataacatgcttttttttttgttaaaatgtgaacagTTGATGCAAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAACAGTAGTCG
species | Arabidopsis thaliana |
transcript | AT1G08930.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCTAAACATGTCCGAGGATCGTTTGTGTTCGCCAATCAG TTGATGCAAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATTEST: gi|124928187|gb|EL005851.1|EL005851
genomic: CCTAAACATGTCCGAGGATCGTTTGTGTTCGCCAATCAGgtacgtaaat ... atgtgaacagTTGATGCAAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATT
EST: TTCGCCAATCAG TTGATGCAAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATTEST: gi|125064670|gb|EL132212.1|EL132212
genomic: TTCGCCAATCAGgtacgtaaat ... atgtgaacagTTGATGCAAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATT
EST: CCGAAATTGCACCTAAACATGTCCGAGGATCGTTTGTGTTCGCCAATCAG TTGATGCAAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTTAT
genomic: CCGAAATTGCACCTAAACATGTCCGAGGATCGTTTGTGTTCGCCAATCAGgtacgtaaat ... atgtgaacagTTGATGCAAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTT-AT
atgtattaaattttcgttatataacatgcttttttttttgttaaaatgtgaacagTTGATGCAAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAACAGTAGTCG
atataac putative branch site (score: 3)
ttaaattttcgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtaaatttctatttaatttactttactgttatttttaaaacacatgtattaaattttcgttatataacatgcttttttttttgttaaaatgtgaacagTTGATGCAAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAACAGTAGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA