1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atcgatatgaaccagttaataagcctaaaaattgaagcttgagtaatggcaagtctaatattattacacatgtaaaaaagaaactatgttgttgtcacagGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATG
species | Arabidopsis thaliana |
transcript | AT1G08110.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGNATTTG GGCACATTGGGGTTACCGTTGATTATGTGEST: gi|86042017|gb|DR337772.1|DR337772
genomic: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGgtaacctcct ... gttgtcacagGGCACATTGGGGTTACCGTTGATGATGTG
EST: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTG GGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTGEST: gi|124991086|gb|EL063355.1|EL063355
genomic: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGgtaacctcct ... gttgtcacagGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTG
EST: TTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGTATTTG GGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTEST: gi|86058483|gb|DR354240.1|DR354240
genomic: TTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGG-ATTTGgtaacctcct ... gttgtcacagGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATT
EST: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTG GGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGAEST: gi|86042021|gb|DR337776.1|DR337776
genomic: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGgtaacctcct ... gttgtcacagGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGA
EST: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTG GGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGEST: gi|86058480|gb|DR354237.1|DR354237
genomic: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGgtaacctcct ... gttgtcacagGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCG
EST: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTG GGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTGEST: gi|86058481|gb|DR354238.1|DR354238
genomic: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGgtaacctcct ... gttgtcacagGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTG
EST: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTG GGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTGEST: gi|86079248|gb|DR375005.1|DR375005
genomic: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGgtaacctcct ... gttgtcacagGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTG
EST: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTG GGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTGEST: gi|86058489|gb|DR354246.1|DR354246
genomic: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGgtaacctcct ... gttgtcacagGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTG
EST: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTG GGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTGEST: gi|86086149|gb|DR381908.1|DR381908
genomic: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGgtaacctcct ... gttgtcacagGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTG
EST: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTG GGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTGEST: gi|301501106|gb|HO206646.1|HO206646
genomic: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGgtaacctcct ... gttgtcacagGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTG
EST: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTG GGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTGEST: gi|124907673|gb|EH981753.1|EH981753
genomic: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGgtaacctcct ... gttgtcacagGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTG
EST: TGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTG GGCACATTGGGGTTACCGTTGEST: gi|125232267|gb|EL246352.1|EL246352
genomic: TGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGgtaacctcct ... gttgtcacagGGCACATTGGGGTTACCGTTG
EST: GGTTATCACAATGGGAACGTCTGAGCCTCGTGGA-TTG GGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTGEST: gi|86058485|gb|DR354242.1|DR354242
genomic: GGTTATCACAATGGGAAC-TCTGAGCCTCGTGGATTTGgtaacctcct ... gttgtcacagGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTG
EST: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTG GGCACATTGGGGTTAC
genomic: TCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGgtaacctcct ... gttgtcacagGGCACATTGGGGTTAC
atggcaagtctaatattattacacatgtaaaaaagaaactatgttgttgtcacagGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATG
gtctaat putative branch site (score: 3)
taatattattacacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcgatatgaaccagttaataagcctaaaaattgaagcttgagtaatggcaagtctaatattattacacatgtaaaaaagaaactatgttgttgtcacagGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA