1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaattaaggactttgtgttaaaaatgtttgtttgttggctttcgtataacatgttttctcttgagagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT
species | Arabidopsis thaliana |
transcript | AT5G62240.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430576|gb|EG473168.1|EG473168
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAGGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430569|gb|EG473161.1|EG473161
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACGG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430547|gb|EG473139.1|EG473139
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: TAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430546|gb|EG473138.1|EG473138
genomic: TAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430548|gb|EG473140.1|EG473140
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430549|gb|EG473141.1|EG473141
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: CAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430567|gb|EG473159.1|EG473159
genomic: CAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430536|gb|EG473128.1|EG473128
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430565|gb|EG473157.1|EG473157
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430559|gb|EG473151.1|EG473151
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430571|gb|EG473163.1|EG473163
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430537|gb|EG473129.1|EG473129
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: AACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430560|gb|EG473152.1|EG473152
genomic: AACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430541|gb|EG473133.1|EG473133
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430542|gb|EG473134.1|EG473134
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430578|gb|EG473170.1|EG473170
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430540|gb|EG473132.1|EG473132
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430552|gb|EG473144.1|EG473144
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430582|gb|EG473174.1|EG473174
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430551|gb|EG473143.1|EG473143
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430556|gb|EG473148.1|EG473148
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430558|gb|EG473150.1|EG473150
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430585|gb|EG473177.1|EG473177
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430544|gb|EG473136.1|EG473136
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430554|gb|EG473146.1|EG473146
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430580|gb|EG473172.1|EG473172
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGEST: gi|116430538|gb|EG473130.1|EG473130
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
taaaaatgtttgtttgttggctttcgtataacatgttttctcttgagagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT
gtataac putative branch site (score: 3)
tataacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattaaggactttgtgttaaaaatgtttgtttgttggctttcgtataacatgttttctcttgagagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAGACACATTAGGAACAAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT