1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagcttgttacctgttctcccacaatttctcaaatctatacgtttcaatcttattagtgatattatgagcaaaatcataacttaaaactttgtcgtcacagTCTGATCAAGCGCAATGGAACGGTGGTGGATACTATGGATACCCTCCACAGCCACAGGGCGGCTATGGTTATGCAGCTCAACCACCAACTCAAGACCCTA
species | Arabidopsis thaliana |
transcript | AT5G54900.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAGGTGGACAAAGCATCCGTCTTTCGTGGGGACGTAGTCCAAACAAGCAG TCTGATCAAGCGCAATGGAACGGTGGTGGATACTAEST: gi|86054573|gb|DR350330.1|DR350330
genomic: TAGGTGGACAAAGCATCCGTCTTTCGTGGGGACGTAGTCCAAACAAGCAGgttagcttgt ... gtcgtcacagTCTGATCAAGCGCAATGGAACGGTGGTGGATACTA
EST: AGGTGGACAAAGCATCCGTCTTTCGTGGGGACGTAKY--AANACAAGCAG TCTGATCAAGCGCAATGGAACGGTGGTGGATACTATGGATACCCTCCACAEST: gi|116479564|gb|EG522156.1|EG522156
genomic: AGGTGGACAAAGCATCCGTCTTTCGTGGGGACGTAGTCCAA-ACAAGCAGgttagcttgt ... gtcgtcacagTCTGATCAAGCGCAATGGAACGGTGGTGGATACTATGGATACCCTCCACA
EST: TAGGTGGACAAAGCATCCGTCTTTCGTGGGGACGTAGTCCAAACAAGCAG TCTGATCAAGCGCAATGGAACGGTGGTGGATACTATGGATACCCTCCACAGEST: gi|163971886|gb|ES058338.1|ES058338
genomic: TAGGTGGACAAAGCATCCGTCTTTCGTGGGGACGTAGTCCAAACAAGCAGgttagcttgt ... gtcgtcacagTCTGATCAAGCGCAATGGAACGGTGGTGGATACTATGGATACCCTCCACAG
EST: CTTTCGTGGGGACGTAGTCCAAACAAGCAG TCTGATCAAGCGCAATGGAACGGTGGTGGATACTATGGATACCCTCCACAGEST: gi|86083467|gb|DR379226.1|DR379226
genomic: CTTTCGTGGGGACGTAGTCCAAACAAGCAGgttagcttgt ... gtcgtcacagTCTGATCAAGCGCAATGGAACGGTGGTGGATACTATGGATACCCTCCACAG
EST: TAGGTGGACAAAGCATCCGTCTTTCGTGGGGACGTAGTCCAAACAAGCAG TCTGATCAAGCGCAATGGAACGGTGGTGGATACTATGGATACCCTCCACAGEST: gi|116479553|gb|EG522145.1|EG522145
genomic: TAGGTGGACAAAGCATCCGTCTTTCGTGGGGACGTAGTCCAAACAAGCAGgttagcttgt ... gtcgtcacagTCTGATCAAGCGCAATGGAACGGTGGTGGATACTATGGATACCCTCCACAG
EST: TAGGTGGACAAAGCATCCGTCTTTCGTGGGGACGTAGTCCAAACAAGCAG TCTGATCAAGCGCAATGGAACGGTGGTGGATACTATGGATACCCTCCACAGEST: gi|164029423|gb|ES175237.1|ES175237
genomic: TAGGTGGACAAAGCATCCGTCTTTCGTGGGGACGTAGTCCAAACAAGCAGgttagcttgt ... gtcgtcacagTCTGATCAAGCGCAATGGAACGGTGGTGGATACTATGGATACCCTCCACAG
EST: TAGGTGGACAAAGCATCCGTCTTCCGTGGGGACGTAGTCCAAACAAGCAG TCTGATCAAGCGCAATGGAACGGTGGTGGATACTAT
genomic: TAGGTGGACAAAGCATCCGTCTTTCGTGGGGACGTAGTCCAAACAAGCAGgttagcttgt ... gtcgtcacagTCTGATCAAGCGCAATGGAACGGTGGTGGATACTAT
aatcttattagtgatattatgagcaaaatcataacttaaaactttgtcgtcacagTCTGATCAAGCGCAATGGAACGGTGGTGGATACTATGGATACCCTCCACAGCCACAGGGCGGCTATGGTTATGCAGCTCAACCACCAACTCAAGACCCTA
tcataac putative branch site (score: 2)
ctttgtc putative PPT
aaaatcataacttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcttgttacctgttctcccacaatttctcaaatctatacgtttcaatcttattagtgatattatgagcaaaatcataacttaaaactttgtcgtcacagTCTGATCAAGCGCAATGGAACGGTGGTGGATACTATGGATACCCTCCACAGCCACAGGGCGGCTATGGTTATGCAGCTCAACCACCAACTCAAGACCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA