1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcatctcacatggaccttctttccattttgagggttgtgtatgatggttgtctgttgtagcttaattctcttgtaagttcctttaaactcggcattttagGTCTTTTCTACTCTGGTTTTCATGGTCCTCCATATGCGTATGCGCTTCCTTCTGTTGCAACAGCGGGATACAATTCGGTTAACTACGCACCCAACGGTTC
species | Arabidopsis thaliana |
transcript | AT5G04430.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAGGACGATCATTACTCCCAGAATGTGCATTCCCCATATTCATATGCAG GTCTTTTCTACTCEST: gi|124786116|gb|EH875795.1|EH875795
genomic: TGAGGACGATCATTACTCCCAGAATGTGCATTCCCCATATTCATATGCAGgtatatcaac ... ggcattttagGTCTTTTCTACTC
EST: TGAGGACGATCATTACTCCCAGAATGTGCATTCCCCATATTCATATGCAG GTCTTTTCTACTCTGGTTTT
genomic: TGAGGACGATCATTACTCCCAGAATGTGCATTCCCCATATTCATATGCAGgtatatcaac ... ggcattttagGTCTTTTCTACTCTGGTTTT
ggttgtctgttgtagcttaattctcttgtaagttcctttaaactcggcattttagGTCTTTTCTACTCTGGTTTTCATGGTCCTCCATATGCGTATGCGCTTCCTTCTGTTGCAACAGCGGGATACAATTCGGTTAACTACGCACCCAACGGTTC
gcttaat putative branch site (score: 4)
ttaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatctcacatggaccttctttccattttgagggttgtgtatgatggttgtctgttgtagcttaattctcttgtaagttcctttaaactcggcattttagGTCTTTTCTACTCTGGTTTTCATGGTCCTCCATATGCGTATGCGCTTCCTTCTGTTGCAACAGCGGGATACAATTCGGTTAACTACGCACCCAACGGTTC
- - ctcacat
- - - - - - - - -tctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaactc