1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaaaactatattgttatgagtcttatgatatttaggttttaacaaagatgtattcgattaattggtctttgctatttactaacttgaatggtccctttgcttctgttaacaactaatggaattgtgtgtgtttgtgtagGCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAG
species | Arabidopsis thaliana |
transcript | AT4G31300.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAG GCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATAEST: gi|86074232|gb|DR369989.1|DR369989
genomic: CGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAGgtaaaaacta ... gtttgtgtagGCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATA
EST: CGGGATCCCACTTGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAG GCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATAEST: gi|164165644|gb|ES199899.1|ES199899
genomic: CGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAGgtaaaaacta ... gtttgtgtagGCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATA
EST: GCAACCGTTTGCCATTGGAG GCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATAEST: gi|124918818|gb|EH992621.1|EH992621
genomic: GCAACCGTTTGCCATTGGAGgtaaaaacta ... gtttgtgtagGCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATA
EST: CGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAG GCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCEST: gi|125142045|gb|EL179546.1|EL179546
genomic: CGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAGgtaaaaacta ... gtttgtgtagGCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACC
EST: CGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAG GCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCGGGCTTGGAAAGATAEST: gi|116444628|gb|EG487220.1|EG487220
genomic: CGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAGgtaaaaacta ... gtttgtgtagGCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATA
EST: CGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAG GCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGGAAGATAEST: gi|164142817|gb|ES036871.1|ES036871
genomic: CGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAGgtaaaaacta ... gtttgtgtagGCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATA
EST: GGATCCCACTTGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAG GCTCTGGTTCGAGCTATCTCTACGGGTTCEST: gi|47831542|gb|CK121226.1|CK121226
genomic: GGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAGgtaaaaacta ... gtttgtgtagGCTCTGGTTCGAGCTATCTCTACGGGTTC
EST: CGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAG GCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATAEST: gi|116444625|gb|EG487217.1|EG487217
genomic: CGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAGgtaaaaacta ... gtttgtgtagGCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATA
EST: CGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAG GCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATA
genomic: CGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCATTGGAGgtaaaaacta ... gtttgtgtagGCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATA
tgaatggtccctttgcttctgttaacaactaatggaattgtgtgtgtttgtgtagGCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAG
aactaat putative branch site (score: 2)
ttaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaactatattgttatgagtcttatgatatttaggttttaacaaagatgtattcgattaattggtctttgctatttactaacttgaatggtccctttgcttctgttaacaactaatggaattgtgtgtgtttgtgtagGCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC