1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttcgtctagtttaaacaagtctttgttcttaatgacatttgttctgtttgtttactctttgccaagtctgagtttttgaggcttgaacagGTACTTTGTGGTCGATACAGTGATGAGGAGTTTTTCCAGATTAGATGCAAAG
species | Arabidopsis thaliana |
transcript | AT4G16060.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTGTTCCTGAAACATTGGAAGGCANACCTTACACCAATTCTGCG GTNCTTTGTGGEST: gi|164046644|gb|ES200913.1|ES200913
genomic: GTTGTTCCTGAAACATTGGAAGGCAAACCTTACACCAATTCTGCGgttcgtctag ... gcttgaacagGTACTTTGTGG
EST: GGAAGGCAAACCTTACACCAATTCTGCG GTACTTTGTGGTCGATACAGTGATGAGGAGTTTTTTCCAGATTAGATGCAAEST: gi|164209147|gb|ES053896.1|ES053896
genomic: GGAAGGCAAACCTTACACCAATTCTGCGgttcgtctag ... gcttgaacagGTACTTTGTGGTCGATACAGTGATGAGGAGTTTTT-CCAGATTAGATGCAA
EST: GCTGTTGTTCCTGAAACATTGGAAGGCAAACCTTACACCAATTCTGCG GTACTTTGTGGTCGATACAGTGATGAGGAGTTTTTCCAGATTAGATGCAAA
genomic: GCTGTTGTTCCTGAAACATTGGAAGGCAAACCTTACACCAATTCTGCGgttcgtctag ... gcttgaacagGTACTTTGTGGTCGATACAGTGATGAGGAGTTTTTCCAGATTAGATGCAAA
catttgttctgtttgtttactctttgccaagtctgagtttttgaggcttgaacagGTACTTTGTGGTCGATACAGTGATGAGGAGTTTTTCCAGATTAGATGCAAAG
tttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtctagtttaaacaagtctttgttcttaatgacatttgttctgtttgtttactctttgccaagtctgagtttttgaggcttgaacagGTACTTTGTGGTCGATACAGTGATGAGGAGTTTTTCCAGATTAGATGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG