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gtgagattaaatttctcgtactctttctccctccgtctatggtgtttgttttctttcatgttatgctgcctataatactagattcgttgttactgaaacacttgatactgtgttcagGATCGATTCCCTCTCTGTATTACCTTCATCGTTCACGTCACAGGATGCAAACAAGATGTTGCTTCTTTGTCCCTCTGTCCAATCAGCTCTCAAG
species | Arabidopsis thaliana |
transcript | AT3G46220.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTGGATTCTGCAACTGAGGATGCTATTGAACAAAACAGTTG GATCGATTCCCTCTCTGTATTACCTTCATCGTTCACGTCACAGGATGCAEST: gi|164102705|gb|ES047284.1|ES047284
genomic: TGCTGGATTCTGCAACTGAGGATGCTATTGAACAAAACAGTTGgtgagattaa ... ctgtgttcagGATCGATTCCCTCTCTGTATTACCTTCATCGTTCACGTCACAGGATGCA
EST: TTCTGCAACTGAGGATGCTATTGAACAAAACAGTTG GATCGATTCCCTCTCTGTATTACCTTCATCGTTCACGTCACGGGATGCAAA
genomic: TTCTGCAACTGAGGATGCTATTGAACAAAACAGTTGgtgagattaa ... ctgtgttcagGATCGATTCCCTCTCTGTATTACCTTCATCGTTCACGTCACAGGATGCAAA
atgctgcctataatactagattcgttgttactgaaacacttgatactgtgttcagGATCGATTCCCTCTCTGTATTACCTTCATCGTTCACGTCACAGGATGCAAACAAGATGTTGCTTCTTTGTCCCTCTGTCCAATCAGCTCTCAAG
acttgat putative branch site (score: 5)
tataatactagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagattaaatttctcgtactctttctccctccgtctatggtgtttgttttctttcatgttatgctgcctataatactagattcgttgttactgaaacacttgatactgtgttcagGATCGATTCCCTCTCTGTATTACCTTCATCGTTCACGTCACAGGATGCAAACAAGATGTTGCTTCTTTGTCCCTCTGTCCAATCAGCTCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC