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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgcatttaacaggtttaccatgttttttttctacatgtactaagaagagtcatcttgtttaggttatctgttgtgtgtagttaacaaaatatgtggtatggaagtgtggcatctgtgcttatatattttctctttgttggctttcagAGTGGTAGGAGGGCTTCTCAGTGCGTATGATCTTTCTGGGGATAAAATTTTCCTTGAAAAGGCTATGGATATTGCAGACAGATTATTGCCTGCATGGGAC

Basic information

species Arabidopsis thaliana
transcript AT3G21160.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G21160.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA07G02290.1 (Glycine max), 3'ss of exon 4
gttgcatttaacaggtttaccatgttttttttctacatgtactaa--gaagagtcatcttgtttaggttatctgttgtgtgtagttaacaaaatatgtggtatggaagtgtggcatctgtgcttatatattttctctttgttggctttcagAGTGGTAGGAGGGCTTCTCAGTGCGTATGATCTTTCTGGGGATAAAATTTTCCTTGAAAAGGCTATGGATATTGCAGACAGATTATTGCCTGCATGGGAC
||| | ||||  | ||||||  ||   ||    | | |   | |     | | | || || || || | || ||||      ||  |||  |   |||  | |  |  | |    ||| || |  |  |||| | |          | |||||| ||||| || ||||| ||||| ||||||||||| ||||| ||| |||||||  | || || || || ||||||||||||||||||||||||||| | 
gttac-tttataaagtttactttgcagttgaagtcccttccccatttacaaaattatatttttgagctcatgtgtt------agacaactgatattgtttttttaatctttt---tctttgttggtcgatttccacc-----aaaatccagAGTAGTAGGTGGTCTTCTTAGTGCATATGATCTTTCAGGGGACAAAGTTTTCCTCAACAAAGCAATAGAAATTGCAGACAGATTATTGCCTGCATGGAAT

upper sequence: AT3G21160.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA08G23730.1 (Glycine max), 3'ss of exon 5
gttgcatttaacaggtttaccatgtttttt---ttctacatgtactaagaagagtcatcttgtttaggttatctgttgtgtgtagttaacaaaatatgtggtatggaagtgtggcatctgtgcttatatattttctctttgttggctttcagAGTGGTAGGAGGGCTTCTCAGTGCGTATGATCTTTCTGGGGATAAAATTTTCCTTGAAAAGGCTATGGATATTGCAGACAGATTATTGCCTGCATGGGAC
||| | ||||  ||||||||  ||   ||    |||       | | | || ||| || || || || | || ||||      ||   ||  | | | |  |    ||   |    | | || |  |  |||| | |          | |||||| ||||| || ||||| ||||| ||||||||||| ||||| ||| | ||||| || || || || || ||||||||||||||| ||||||||||| | 
gttac-tttataaggtttactttgcagttgaagttccttccccatttacaaaagttatatttttgagctcatgtgtt------agactactgattgttttttt---aatcat--tctttttgttggtcgatttccacc-----aaaatccagAGTAGTAGGTGGCCTTCTTAGTGCATATGATCTTTCAGGGGACAAAGTATTCCTCGACAAAGCAATAGAAATTGCAGACAGATTACTGCCTGCATGGAAT

upper sequence: AT3G21160.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA17G06600.1 (Glycine max), 3'ss of exon 5
gttgcatttaacaggtttaccatgttttttttctacatgtactaagaagagtcatcttgtttaggttatctgttgtgtgtagttaacaaaatatgtggtatggaagtgtggcatctgtgcttatatattttctctttgttggctttcagAGTGGTAGGAGGGCTTCTCAGTGCGTATGATCTTTCTGGGGATAAAATTTTCCTTGAAAAGGCTATGGATATTGCAGACAGATTATTGCCTGCATGGGAC
|||| |||  | ||||| |   |   |||| |  ||||    |         |  |   || | ||| |      | ||    |  ||| | || | |  |   |||    ||| |   || || | | |  | |||  ||| ||  |||||  |||| || ||||||||||| |||||||| ||||| || ||| |||||||||| |||||||  ||| ||||||| |  ||||| ||||| ||| | 
gttgaattaga-aggttcaatcttagttttgttgacataatttct------ccgccaccttaaagttgttgtaactttgctagttgcaacaaattttgctttctagtc---cattttgtctcatttgtctattattt--tggttt--agAGTTCTAGGTGGCCTTCTCAGTGCTTATGATCTCTCTGGTGACAAAGTTTTCCTTGAGAAGGCTAAAGATCTTGCAGATAAGTTATTACCTGCTTGGAAT

upper sequence: AT3G21160.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv11s0052g00140.t01 (Vitis vinifera), 3'ss of exon 5
gttgcatttaacaggtttaccatgttttttttctacatgtactaagaagagtcatcttgtttaggttatctgttgtgtgtagttaacaaaatatgtggtatggaagtgtggcatctgtgcttatatattttctctttgttggcttt---------cagAGTGGTAGGAGGGCTTCTCAGTGCGTATGATCTTTCTGGGGATAAAATTTTCCTTGAAAAGGCTATGGATATTGCAGACAGATTATTGCCTGCATGGGAC
||||||||  |  | || | | | ||| |||  |  ||  | ||||     |  | ||  || ||  | | |  ||      |        |  | || |     || || ||| |   ||  | | | | || |||||   |||          ||||||  |||| || ||||| ||||| ||||||||||| || || ||| | |||||||||||||||   ||||||||||| |||||  ||||||| ||| | 
gttgcattataaggtttcatcttatttatttatttaat--aataagtttctttttttttctttgggga-cagaggtcctctctgggatggttgagaggaagaagcgtatgacatgtccactgctttttatcctttttgtatacttatgttgaatgcagAGTTTTAGGTGGACTTCTTAGTGCATATGATCTTTCCGGTGACAAAGTCTTCCTTGAAAAGGCTCAAGATATTGCAGATAGATTGCTGCCTGCTTGGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtatggaagtgtggcatctgtgcttatatattttctctttgttggctttcagAGTGGTAGGAGGGCTTCTCAGTGCGTATGATCTTTCTGGGGATAAAATTTTCCTTGAAAAGGCTATGGATATTGCAGACAGATTATTGCCTGCATGGGAC
                               tattttctctttgtt  CT-rich tract
                          ttatatattttctctt  TA-rich tract