1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagatgttagtgtttttttttacctgctctgagttcagttctctggtcaagtgctggatagattgttccctgcaaatatctgtttgtgaaatctcaatgaatatgccttgtttgacccacccttgtcttatcccacagATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGAACTACCACTAGTGGTATGCACACAGGTGAAGGAGCCAAACGGAAGAAAC
species | Arabidopsis thaliana |
transcript | AT3G13062.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACATTATCTGCTGTAAGCTTAATGTAAAAAG ATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGEST: gi|164068647|gb|ES107074.1|ES107074
genomic: ACATTATCTGCTGTAAGCTTAATG-AAAAAGgtgagatgtt ... tatcccacagATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGG
EST: AAGCTTAATG-AAAAG ATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGAEST: gi|116484403|gb|EG526995.1|EG526995
genomic: AAGCTTAATGAAAAAGgtgagatgtt ... tatcccacagATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGA
EST: GTCATCGACCCCAAGGGCCCACATTATCTGCTGTAAGCTTAATGAAAAAG ATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGAEST: gi|86078470|gb|DR374227.1|DR374227
genomic: GTCATCGACCCCAAGGGCCCACATTATCTGCTGTAAGCTTAATGAAAAAGgtgagatgtt ... tatcccacagATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGA
EST: GTCATCGACCCCAA-GGCCCACATTATCTGCTGTAAGCTTAATGAAAAAG ATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGAEST: gi|19799639|gb|AU230929.1|AU230929
genomic: GTCATCGACCCCAAGGGCCCACATTATCTGCTGTAAGCTTAATGAAAAAGgtgagatgtt ... tatcccacagATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGA
EST: GCTGTAAGCTTAATG-AAAAG ATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTAC-AACTCCTCGGGA
genomic: GCTGTAAGCTTAATGAAAAAGgtgagatgtt ... tatcccacagATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGA
ttgtgaaatctcaatgaatatgccttgtttgacccacccttgtcttatcccacagATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGAACTACCACTAGTGGTATGCACACAGGTGAAGGAGCCAAACGGAAGAAAC
gtttgac putative branch site (score: 4)
cccttgtcttatccc putative PPT
aatgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatgttagtgtttttttttacctgctctgagttcagttctctggtcaagtgctggatagattgttccctgcaaatatctgtttgtgaaatctcaatgaatatgccttgtttgacccacccttgtcttatcccacagATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGAACTACCACTAGTGGTATGCACACAGGTGAAGGAGCCAAACGGAAGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA