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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttctatatccagactcgttcttcttcatgtcctcggtaggtaatattttggatttcggattgcagGAGGAGGGTTTGGGGAAACGGTTGGCGCATGGGCATCCGTTTTTGGAAGCTGAGGTTGCTTACTGTGCAAGGCACGAGTACTGCGAATCAGCGGTTGATT

Basic information

species Arabidopsis thaliana
transcript AT3G10370.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116483431|gb|EG526023.1|EG526023
EST:     TGTCTCATGCCTATGGTTCAATGGCTGACCGAGTTGCCACCATAGCTCAG                         GAGGAGGGTTTGGGGAAACGGTTGGCGCATGGGCATCCGTTTTTGGAAGTT
genomic: TGTCTCATGCCTATGGTTCAATGGCTGACCGAGTTGCCACCATAGCTCAGgtatggttct ... cggattgcagGAGGAGGGTTTGGGGAAACGGTTGGCGCATGGGCATCCGTTTTTGGAAGCT
EST: gi|116483425|gb|EG526017.1|EG526017
EST:     TGTCTCATGCCTATGGTTCAATGGCTGACCGAGTTGCCACCATAGCTCAG                         GAGGAGGGTTTGGGGAAACGGTTGGCGCATGGGCATCCGTTTTTGGAAGCT
genomic: TGTCTCATGCCTATGGTTCAATGGCTGACCGAGTTGCCACCATAGCTCAGgtatggttct ... cggattgcagGAGGAGGGTTTGGGGAAACGGTTGGCGCATGGGCATCCGTTTTTGGAAGCT
EST: gi|116483421|gb|EG526013.1|EG526013
EST:     TGTCTCATGCCTATGGTTCAATGGCTGACCGAGTTGCCACCATAGCTCAG                         GAGGAGGGTTTGGGGAAACGGTTGGCGCATGGGCATCCGTTTTTGGAAGCT
genomic: TGTCTCATGCCTATGGTTCAATGGCTGACCGAGTTGCCACCATAGCTCAGgtatggttct ... cggattgcagGAGGAGGGTTTGGGGAAACGGTTGGCGCATGGGCATCCGTTTTTGGAAGCT
EST: gi|116437589|gb|EG480181.1|EG480181
EST:     TGTCTCATGCCTATGGTTCAATGGCTGACCGAGTTGCCACCATAGCTCAG                         GAGGAGGGTTTGGGGAAACGGTTGGCGCATGGGCATCCGTTTTTGGAAGCT
genomic: TGTCTCATGCCTATGGTTCAATGGCTGACCGAGTTGCCACCATAGCTCAGgtatggttct ... cggattgcagGAGGAGGGTTTGGGGAAACGGTTGGCGCATGGGCATCCGTTTTTGGAAGCT
EST: gi|116483428|gb|EG526020.1|EG526020
EST:     TGTCTCATGCCTATGGTTCAATGGCTGACCGAGTTGCCACCATAGCTCAG                         GAGGAGGGTTTGGGGAAACGGTTGGCGCATGGGCATCCGTTTTTGGAAGCT
genomic: TGTCTCATGCCTATGGTTCAATGGCTGACCGAGTTGCCACCATAGCTCAGgtatggttct ... cggattgcagGAGGAGGGTTTGGGGAAACGGTTGGCGCATGGGCATCCGTTTTTGGAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agactcgttcttcttcatgtcctcggtaggtaatattttggatttcggattgcagGAGGAGGGTTTGGGGAAACGGTTGGCGCATGGGCATCCGTTTTTGGAAGCTGAGGTTGCTTACTGTGCAAGGCACGAGTACTGCGAATCAGCGGTTGATT
                              taatattttggattt  TA-rich tract