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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattactctctccaggaccttcttgtaagatatatacatttatcaatccatattccgcagtttaaaatttcttttcttgctgtgtaaacagGCAACTAGAGATCGATAGCAAGTTCTTGGAAGCACAGAACATAATGGATTACAGTCTTTTGCTCGGTGTGCATCATCGAGCTCCACAGCACTTAAGATCC

Basic information

species Arabidopsis thaliana
transcript AT3G09920.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G09920.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G374973_T01 (Zea mays), 3'ss of exon 6
----gtattactctctccaggaccttcttgtaagatatatacatttatcaatccatattccgcagtttaaaatttcttttcttgctgtgtaaacagGCAACTAGAGATCGATAGCAAGTTCTTGGAAGCACAGAACATAATGGATTACAGTCTTTTGCTCGGTGTGCATCATCGAGCTCCACAGCACTTAAGATCC
    | |    | |||| |  |      | |   || | | |  ||||     || ||| | |   |   |  | || |||   |||| |   ||||||  | || |  |||||  | || |||  | |||||   |||||||||||||| ||  |||| ||||| ||| || ||||||||||||||||  |  | 
gtgagcac-gttttctctaaaaatcatgtttcttatgtgttctgttatgtggtcacattacactcatctcagatactgttc--actgt-tcttcagGCAGATTGAAACAGATAGTGATTTTTTGAGAACACAGCGGATAATGGATTACAGCCTACTGCTTGGTGTCCATTATAGAGCTCCACAGCACTTGCGGACA

upper sequence: AT3G09920.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G050309_T01 (Zea mays), 3'ss of exon 6
----gtattactctctccaggaccttcttgtaagatatatacatttatcaatccatattccgc--agtttaaaatttcttttcttgctgtgtaaacagGCAACTAGAGATCGATAGCAAGTTCTTGGAAGCACAGAACATAATGGATTACAGTCTTTTGCTCGGTGTGCATCATCGAGCTCCACAGCACTTAAGATCC
    | || | | |||| || |      | ||   | | | |  ||||    | | ||| | |  |  | |||||    ||  ||  | |  | ||||     | || |  || ||  | || |||  | |||||   |||||||||||||| ||  |||| ||||| ||| || ||||||||||||||||  |  | 
gtgagcat-attttctctagaaatgatgttta---tgtgttctgttatgtgacgacattacacttatctcaaaatactgttgattattcttcagACAGA----TTGAAACAGACAGTGATTTTTTGAGAACACAGCGGATAATGGATTACAGCCTACTGCTTGGTGTCCATTATAGAGCTCCACAGCACTTGCGGACA

upper sequence: AT3G09920.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv08s0007g04700.t01 (Vitis vinifera), 3'ss of exon 5
gtattactct-ctccagg--accttcttgtaagatatatacatt------tatcaatccatattccgcagtttaaaatttcttttcttgctgtgtaaacagGCAACTAGAGATCGATAGCAAGTTCTTGGAAGCACAGAACATAATGGATTACAGTCTTTTGCTCGGTGTGCATCATCGAGCTCCACAGCACTTAAGATCC
| ||   |   || || |  |   ||  ||| |   | |   ||      ||||||| |   |  |   | ||| | |||| ||   |    | ||  ||||||  | ||||| || || || || |||||||||||| |||| |||||||| || ||||| || ||||||||| ||||||| || || ||  |  | || 
gcatagtttggctgcaagtgaatgtcaggtatgtagtctcttttcttgcatatcaatgctcctgtcattggttatagtttccttgtatatctt-tatgcagGCAGATTGAGATTGACAGTAAATTTTTGGAAGCACAGCACATTATGGATTATAGCCTTTTACTGGGTGTGCATTATCGAGCCCCCCAACATCTGCGGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttatcaatccatattccgcagtttaaaatttcttttcttgctgtgtaaacagGCAACTAGAGATCGATAGCAAGTTCTTGGAAGCACAGAACATAATGGATTACAGTCTTTTGCTCGGTGTGCATCATCGAGCTCCACAGCACTTAAGATCC
                               tttcttttcttgctgt  CT-rich tract
                        tttaaaatttcttttc  TA-rich tract