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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtatcttgactcgaacgttttgatagatacatttgcaaaggattttatttttatgagtatctaattcttgattataactgatggttctctgtttgattgtaaatgcagCATCACAGCAATAAGAAGCAAAAAACTGTGAAGAAGAGCATACTTCACAAGTGACGATCTCTTTTATTTTTGTGGCTTAAAATTTCCAAACCTGTTACTC

Basic information

species Arabidopsis thaliana
transcript AT3G04500.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116430691|gb|EG473283.1|EG473283
EST:     AGAGTAGCTGGAAAGAGAGAACAGATCAGGAGGCTGCTGAAAGACAAAAG                         CATCACAGCAATAAGAAGCAAAAAACTGTGAAGAAGAGCATACTTCACAAG
genomic: AGAGTAGCTGGAAAGAGAGAACAGATCAGGAGGCTGCTGAAAGACAAAAGgcaagtatct ... gtaaatgcagCATCACAGCAATAAGAAGCAAAAAACTGTGAAGAAGAGCATACTTCACAAG
EST: gi|86088425|gb|DR384184.1|DR384184
EST:     AGAGTAGCTGGAAAGAGAGAACAGATCAGGAGGCTGCTGAAAGACAAAAG                         CATCACAGCAATAAGAAGCAAAAAACTGTGAAGAAGAGCATACTTCACAAG
genomic: AGAGTAGCTGGAAAGAGAGAACAGATCAGGAGGCTGCTGAAAGACAAAAGgcaagtatct ... gtaaatgcagCATCACAGCAATAAGAAGCAAAAAACTGTGAAGAAGAGCATACTTCACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtatctaattcttgattataactgatggttctctgtttgattgtaaatgcagCATCACAGCAATAAGAAGCAAAAAACTGTGAAGAAGAGCATACTTCACAAGTGACGATCTCTTTTATTTTTGTGGCTTAAAATTTCCAAACCTGTTACTC
        taattcttgattataa  TA-rich tract