1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatagattagagatacacaaacacgcctgcaagttaacatgtgttactccttaatgctttttgttgcttaaatcagGAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTGACATTCTTGTCCATTCCCTTGCAAATGGCCCAGAG
species | Arabidopsis thaliana |
transcript | AT2G05990.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAG GAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGEST: gi|164053583|gb|ES121111.1|ES121111
genomic: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagatta ... cttaaatcagGAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAG
EST: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAG GAAGCTGCTGAATGTGTGAAAAAAGEST: gi|47831556|gb|CK121240.1|CK121240
genomic: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagatta ... cttaaatcagGAAGCTGCTGAATGTGTGAAAAAAG
EST: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAG GAAGCTGCTGAATGTGTGAAAAAAGATTT-GGAAGCATTGEST: gi|124764477|gb|EH854607.1|EH854607
genomic: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagatta ... cttaaatcagGAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTG
EST: CGATATGCAGGATCGTCAAACTGGACCGTACAG GAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTGACATTCTTGTCEST: gi|47829300|gb|CK118984.1|CK118984
genomic: CGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagatta ... cttaaatcagGAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTGACATTCTTGTC
EST: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAG GAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTGACATTCTTGTCEST: gi|125231238|gb|EL245323.1|EL245323
genomic: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagatta ... cttaaatcagGAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTGACATTCTTGTC
EST: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAG GAAGCTGCTGAA
genomic: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagatta ... cttaaatcagGAAGCTGCTGAA
cacgcctgcaagttaacatgtgttactccttaatgctttttgttgcttaaatcagGAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTGACATTCTTGTCCATTCCCTTGCAAATGGCCCAGAG
tttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagattagagatacacaaacacgcctgcaagttaacatgtgttactccttaatgctttttgttgcttaaatcagGAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTGACATTCTTGTCCATTCCCTTGCAAATGGCCCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG