1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tccaaaagtttccatgtttgacctctagtataagttttataacttagttgttgtggattcattaatacattatagtctccacaattgaatggtgtggcagGGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTGGTAGTAGTCTTGAGCAAATGGTCCAACAGATAATGGAAATGGGAGGTGGAAGT
species | Arabidopsis thaliana |
transcript | AT1G79650.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCAAGAACAACCGGC GGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTAGGTAEST: gi|125081792|gb|EL142881.1|EL142881
genomic: CTCAAGAACAACCGGCgtaagtttat ... ggtgtggcagGGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGT-GGTA
EST: CTGCTCAAGAACAACCGGC GGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTGGTAGEST: gi|164190694|gb|ES036405.1|ES036405
genomic: CTGCTCAAGAACAACCGGCgtaagtttat ... ggtgtggcagGGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTGGTAG
EST: TCAAGAACAACCGGC GGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTGGTAG
genomic: TCAAGAACAACCGGCgtaagtttat ... ggtgtggcagGGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTGGTAG
agttgttgtggattcattaatacattatagtctccacaattgaatggtgtggcagGGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTGGTAGTAGTCTTGAGCAAATGGTCCAACAGATAATGGAAATGGGAGGTGGAAGT
cattaat putative branch site (score: 3)
attcattaatacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaaaagtttccatgtttgacctctagtataagttttataacttagttgttgtggattcattaatacattatagtctccacaattgaatggtgtggcagGGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTGGTAGTAGTCTTGAGCAAATGGTCCAACAGATAATGGAAATGGGAGGTGGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG