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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactctcttaacataccattaccaagcgtgccttatgtgttttaaaatgttgcccattttgtaacacataccaccctcaattgcaactttatcatagtttcctaagcagctctttaatgagacttcatattttgcttctaatgcctgaggttctcaactagGTTGGTTCAGAGGAGGAGGAAATGGCACAATATTGCTTAACAAGTACCATCATGCTTTCTCTGACAACTGATGATGAGTCTTCGGGCAAATTCGGCTTAT

Basic information

species Arabidopsis thaliana
transcript AT1G71790.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164034864|gb|ES032568.1|ES032568
EST:     ATGCCATACATGTTATACAG                         GTTGGTTCAGAGGAGGAGGAAATGGCACAATATTGCTTAACAAGTACCATC
genomic: ATGCCATACATGTTATACAGgtgactctct ... tctcaactagGTTGGTTCAGAGGAGGAGGAAATGGCACAATATTGCTTAACAAGTACCATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagctctttaatgagacttcatattttgcttctaatgcctgaggttctcaactagGTTGGTTCAGAGGAGGAGGAAATGGCACAATATTGCTTAACAAGTACCATCATGCTTTCTCTGACAACTGATGATGAGTCTTCGGGCAAATTCGGCTTAT
                             ttctaat  putative branch site (score: 2)
                                            ttctc  putative PPT
                 ttcatatttt  TA-rich tract