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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtaaagccttttatcatcatcatcatttctgcatattgccaaatctcaatatccatcaccattgatctcatctgtctcgtgtttcacagTGAATCCTATTTGCGAGACGCGTTTTCGGCTTCCTACACACAACCAAGAACCATCCAGACAAGTGGCCTTGGACGATTCGGATAGTAGCTCTAAAAACAT

Basic information

species Arabidopsis thaliana
transcript AT1G64530.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116402071|gb|EG444663.1|EG444663
EST:     AGATGCAGAAGACAGTGCAGGTTCATCAACATCGCGTGCTTCTTGCAAAG                         TGAATCCTATTTGCGAGACGCGTTTTCGGCTTCCTACACACAACCAAGAAC
genomic: AGATGCAGAAGACAGTGCAGGTTCATCAACATCGCGTGCTTCTTGCAAAGgtaaagtaaa ... tgtttcacagTGAATCCTATTTGCGAGACGCGTTTTCGGCTTCCTACACACAACCAAGAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgccaaatctcaatatccatcaccattgatctcatctgtctcgtgtttcacagTGAATCCTATTTGCGAGACGCGTTTTCGGCTTCCTACACACAACCAAGAACCATCCAGACAAGTGGCCTTGGACGATTCGGATAGTAGCTCTAAAAACAT
                         cattgat  putative branch site (score: 4)
           tcaatat  TA-rich tract